UHGV-1367882

Genome information

Genome length 38,869 bps

CDS count 55

Completeness 100.00% (complete)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-1367882
vOTU ID	vOTU-056145
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0262955
BioSample	SAMEA2784500
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.75
Jumbo phage	No

Genome content
Genome length	38,869 bps
GC content	51.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	88.74%
Average CDS length	630.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1367882_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1367882_1	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1367882_1	UniRef90	UniRef90_A0A356APS4	Single-stranded DNA-binding protein (Fragment)	NA
UHGV-1367882_1	eggNOG-mapper	1105031.HMPREF1141_2832	Single-stranded DNA-binding protein	NA
UHGV-1367882_1	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1367882_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1367882_3	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-1367882_3	UniRef90	UniRef90_A0A1Y4EXZ8	NA	NA
UHGV-1367882_3	eggNOG-mapper	755731.Clo1100_1141	NA	NA
UHGV-1367882_3	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1367882_3	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1367882_3	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-1367882_4	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1367882_4	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1367882_4	UniRef90	UniRef90_U2SBP2	Recombination and repair protein RecT	NA
UHGV-1367882_4	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-1367882_4	Pfam	PF03837	RecT family	RecT
UHGV-1367882_4	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1367882_4	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1367882_4	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1367882_5	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1367882_5	UniRef90	UniRef90_U2SK35	YqaJ viral recombinase family protein	NA
UHGV-1367882_5	eggNOG-mapper	1226322.HMPREF1545_00014	YqaJ viral recombinase family	NA
UHGV-1367882_5	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1367882_5	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1367882_5	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1367882_5	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1367882_6	Structural annotation	PF21805	NA	NA
UHGV-1367882_10	UniRef90	UniRef90_A0A502IJ20	Arc family DNA-binding protein	NA
UHGV-1367882_10	eggNOG-mapper	1121121.KB894312_gene3201	NA	NA
UHGV-1367882_10	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-1367882_10	Structural annotation	PF03869, NF008671, COG4877	NA	NA
UHGV-1367882_11	PHROG	phrog_2685	partition protein ATPase	other
UHGV-1367882_11	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-1367882_11	Structural annotation	PF12441, TIGR04563, COG4877	NA	NA
UHGV-1367882_13	UniRef90	UniRef90_A0A3R6Q4V1	YHYH domain-containing protein	NA
UHGV-1367882_13	eggNOG-mapper	1163671.JAGI01000002_gene1685	Flagellar rod assembly protein muramidase FlgJ	NA
UHGV-1367882_13	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-1367882_13	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-1367882_14	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1367882_14	UniRef90	UniRef90_UPI000AC1197C	HNH endonuclease	NA
UHGV-1367882_14	eggNOG-mapper	861530.ALOZ01000074_gene990	HNH endonuclease	NA
UHGV-1367882_14	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1367882_14	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1367882_14	Structural annotation	PF08281, PF13392, MF_00245, NF001066, COG2771	NA	NA
UHGV-1367882_16	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1367882_16	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1367882_16	UniRef90	UniRef90_A0A0L6JH68	Helix-turn-helix domain protein	NA
UHGV-1367882_16	eggNOG-mapper	398512.JQKC01000009_gene425	NA	NA
UHGV-1367882_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1367882_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1367882_16	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-1367882_17	KOfam	K14059	int; integrase	NA
UHGV-1367882_17	PHROG	phrog_1	integrase	integration and excision
UHGV-1367882_17	UniRef90	UniRef90_UPI000682AD88	site-specific integrase	NA
UHGV-1367882_17	eggNOG-mapper	887929.HMP0721_1295	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1367882_17	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1367882_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1367882_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1367882_17	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1367882_18	PHROG	phrog_1281	NA	unknown function
UHGV-1367882_18	UniRef90	UniRef90_A8RCY4	NA	NA
UHGV-1367882_18	eggNOG-mapper	428127.EUBDOL_01537	NA	NA
UHGV-1367882_18	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1367882_18	COG	COG3600	NA	NA
UHGV-1367882_18	Structural annotation	PF13274, COG3600	NA	NA
UHGV-1367882_19	PHROG	phrog_443	holin	lysis
UHGV-1367882_19	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-1367882_19	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-1367882_19	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1367882_19	Structural annotation	PF16945	NA	NA
UHGV-1367882_20	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-1367882_20	UniRef90	UniRef90_UPI000CFA6BAA	NA	NA
UHGV-1367882_20	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-1367882_20	Pfam	PF14359	NA	DUF4406
UHGV-1367882_20	Structural annotation	PF14359, COG3613	NA	NA
UHGV-1367882_21	PHROG	phrog_1009	NA	unknown function
UHGV-1367882_21	eggNOG-mapper	97138.C820_00248	NA	NA
UHGV-1367882_22	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1367882_22	PHROG	phrog_435	endolysin	lysis
UHGV-1367882_22	UniRef90	UniRef90_A0A845M011	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1367882_22	eggNOG-mapper	645991.Sgly_0529	PFAM cell wall hydrolase autolysin	NA
UHGV-1367882_22	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1367882_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1367882_23	eggNOG-mapper	632245.CLP_1663	nuclear chromosome segregation	NA
UHGV-1367882_23	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-1367882_23	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1367882_24	PHROG	phrog_13892	minor tail protein	tail
UHGV-1367882_24	eggNOG-mapper	459495.SPLC1_S103340	tail collar domain protein	NA
UHGV-1367882_24	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-1367882_24	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1367882_25	UniRef90	UniRef90_A0A316NL53	BppU_N domain-containing protein	NA
UHGV-1367882_25	Structural annotation	PF17813, NF032891	NA	NA
UHGV-1367882_26	eggNOG-mapper	755731.Clo1100_2421	NA	NA
UHGV-1367882_28	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-1367882_28	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-1367882_29	Structural annotation	PF11650	NA	NA
UHGV-1367882_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-1367882_31	UniRef90	UniRef90_R5SNJ0	Lj928 prophage protein	NA
UHGV-1367882_31	eggNOG-mapper	888060.HMPREF9081_1550	NA	NA
UHGV-1367882_31	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1367882_33	PHROG	phrog_156	portal protein	head and packaging
UHGV-1367882_33	eggNOG-mapper	1121091.AUMP01000003_gene2583	NA	NA
UHGV-1367882_33	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1367882_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1367882_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1367882_35	UniRef90	UniRef90_A0A357WXI7	PBSX family phage terminase large subunit	NA
UHGV-1367882_35	eggNOG-mapper	1321779.HMPREF1984_01311	Phage terminase, large subunit, PBSX family	NA
UHGV-1367882_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1367882_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1367882_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1367882_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-1367882_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1367882_36	Structural annotation	PF05732, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-1367882_40	UniRef90	UniRef90_R5IDP8	RHH_1 domain-containing protein	NA
UHGV-1367882_40	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1367882_40	Structural annotation	PF10723, NF040976, COG4710	NA	NA
UHGV-1367882_41	eggNOG-mapper	1304866.K413DRAFT_4686	NA	NA
UHGV-1367882_42	UniRef90	UniRef90_UPI001D1569CA	antirestriction protein ArdA	NA
UHGV-1367882_43	eggNOG-mapper	1304866.K413DRAFT_4686	NA	NA
UHGV-1367882_45	UniRef90	UniRef90_A0A7C5F8L6	mRNA interferase	NA
UHGV-1367882_45	eggNOG-mapper	584708.Apau_0917	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-1367882_45	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-1367882_45	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-1367882_46	PHROG	phrog_2717	NA	unknown function
UHGV-1367882_46	eggNOG-mapper	552398.HMPREF0866_02231	NA	NA
UHGV-1367882_48	Pfam	PF19905	NA	DUF6378
UHGV-1367882_49	eggNOG-mapper	755731.Clo1100_1152	NA	NA
UHGV-1367882_50	PHROG	phrog_874	NA	unknown function
UHGV-1367882_50	UniRef90	UniRef90_A0A3P6JHM7	Upf86.8	NA
UHGV-1367882_50	eggNOG-mapper	1232449.BAHV02000016_gene1832	NA	NA
UHGV-1367882_50	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1367882_52	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1367882_52	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1367882_52	UniRef90	UniRef90_UPI0008F89ADD	DNA cytosine methyltransferase	NA
UHGV-1367882_52	eggNOG-mapper	742738.HMPREF9460_04053	C-5 cytosine-specific DNA methylase	NA
UHGV-1367882_52	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1367882_52	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1367882_52	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1367882_52	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1367882_52	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1367882_53	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1367882_53	eggNOG-mapper	742740.HMPREF9474_03491	NA	NA
UHGV-1367882_53	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1367882_54	Structural annotation	PF19157	NA	NA
UHGV-1367882_55	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1367882_55	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1367882_55	UniRef90	UniRef90_A0A357WVP9	Single-stranded DNA-binding protein	NA
UHGV-1367882_55	eggNOG-mapper	1121334.KB911069_gene1617	Single-stranded DNA-binding protein	NA
UHGV-1367882_55	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1367882_55	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1367882_55	COG	COG0629	Single-stranded DNA-binding protein	NA