UHGV-1368516

Genome information

Genome length 91,789 bps

CDS count 116

Completeness 100.00% (complete)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-1368516
vOTU ID	vOTU-056255
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0360569
BioSample	SAMEA2581920
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.2
Jumbo phage	No

Genome content
Genome length	91,789 bps
GC content	46.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	116
CDS density	88.37%
Average CDS length	700.60 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1368516_1	Structural annotation	PF08962	NA	NA
UHGV-1368516_2	eggNOG-mapper	471854.Dfer_5528	NA	NA
UHGV-1368516_3	UniRef90	UniRef90_R7GX57	HTH cro/C1-type domain-containing protein	NA
UHGV-1368516_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1368516_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1368516_6	UniRef90	UniRef90_UPI001F20F464	phage holin family protein	NA
UHGV-1368516_6	eggNOG-mapper	1121097.JCM15093_2703	NA	NA
UHGV-1368516_6	Structural annotation	NF035928	NA	NA
UHGV-1368516_7	PHROG	phrog_1501	NA	unknown function
UHGV-1368516_7	UniRef90	UniRef90_R6EVM2	NA	NA
UHGV-1368516_7	eggNOG-mapper	679935.Alfi_0537	NA	NA
UHGV-1368516_7	Pfam	PF18925	NA	DUF5675
UHGV-1368516_7	Structural annotation	PF18925	NA	NA
UHGV-1368516_8	UniRef90	UniRef90_UPI001C49131D	NA	NA
UHGV-1368516_8	eggNOG-mapper	411479.BACUNI_00733	NA	NA
UHGV-1368516_8	Pfam	PF14301	NA	DUF4376
UHGV-1368516_8	Structural annotation	PF14301	NA	NA
UHGV-1368516_9	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-1368516_9	PHROG	phrog_17134	NA	unknown function
UHGV-1368516_9	Structural annotation	PF10794, PF20942, PF13620, NF040788, COG2351	NA	NA
UHGV-1368516_10	PHROG	phrog_38044	NA	unknown function
UHGV-1368516_10	eggNOG-mapper	762982.HMPREF9442_01191	cellulase activity	NA
UHGV-1368516_10	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-1368516_10	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1368516_10	Structural annotation	PF00629, PF20073, NF033675	NA	NA
UHGV-1368516_15	Pfam	PF20459	NA	DUF6712
UHGV-1368516_15	Structural annotation	PF20459	NA	NA
UHGV-1368516_16	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1368516_16	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1368516_16	UniRef90	UniRef90_A0A343JQC1	DNA methylase	NA
UHGV-1368516_16	eggNOG-mapper	755731.Clo1100_1145	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1368516_16	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-1368516_16	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1368516_16	COG	COG0863	DNA modification methylase	NA
UHGV-1368516_16	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1368516_17	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1368516_17	PHROG	phrog_18293	methyltransferase	other
UHGV-1368516_17	UniRef90	UniRef90_A0A255TPS1	Methyltransferase	NA
UHGV-1368516_17	eggNOG-mapper	547042.BACCOPRO_01768	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1368516_17	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1368516_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1368516_17	COG	COG0863	DNA modification methylase	NA
UHGV-1368516_17	Structural annotation	PF01555, NF008572, COG0863	NA	NA
UHGV-1368516_18	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1368516_18	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1368516_18	UniRef90	UniRef90_A0A6V7BHD6	Adenine-specific methyltransferase	NA
UHGV-1368516_18	eggNOG-mapper	1527692.A0A096XVB1_9CAUD	helicase activity	NA
UHGV-1368516_18	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-1368516_19	eggNOG-mapper	1235803.C825_03414	NA	NA
UHGV-1368516_19	Structural annotation	PF05136, MF_04135, TIGR01540, COG5518	NA	NA
UHGV-1368516_20	Structural annotation	PF13619	NA	NA
UHGV-1368516_21	PHROG	phrog_200	lipoprotein	other
UHGV-1368516_21	UniRef90	UniRef90_A0A3R6J4I4	SPFH domain-containing protein	NA
UHGV-1368516_21	eggNOG-mapper	1122989.KB898587_gene2262	SPFH domain / Band 7 family	NA
UHGV-1368516_21	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-1368516_21	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-1368516_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1368516_30	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1368516_30	UniRef90	UniRef90_A0A353E5E4	Cytosine-specific methyltransferase	NA
UHGV-1368516_30	eggNOG-mapper	1033733.CAEK01000007_gene1648	Cytosine-specific methyltransferase	NA
UHGV-1368516_30	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1368516_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1368516_30	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1368516_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1368516_30	Structural annotation	PF00145, MF_02237, TIGR00675, COG0270	NA	NA
UHGV-1368516_36	PHROG	phrog_8684	NA	unknown function
UHGV-1368516_36	UniRef90	UniRef90_UPI001F45D98B	YopX family protein	NA
UHGV-1368516_36	eggNOG-mapper	1235799.C818_02660	YopX protein	NA
UHGV-1368516_36	Pfam	PF09643	YopX protein	YopX
UHGV-1368516_36	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1368516_41	PHROG	phrog_874	NA	unknown function
UHGV-1368516_41	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-1368516_41	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-1368516_46	Structural annotation	PF10628	NA	NA
UHGV-1368516_49	KOfam	K21703	cbbR, cmpR, ndhR; LysR family transcriptional regulator, low CO2-responsive transcriptional regulator	NA
UHGV-1368516_49	PHROG	phrog_3736	NA	unknown function
UHGV-1368516_49	UniRef90	UniRef90_A0A353E8E6	HTH lysR-type domain-containing protein	NA
UHGV-1368516_49	eggNOG-mapper	1298865.H978DRAFT_3177	Bacterial regulatory helix-turn-helix protein, lysR family	NA
UHGV-1368516_49	Pfam	PF00126	Bacterial regulatory helix-turn-helix protein, lysR family	HTH_1
UHGV-1368516_49	Pfam	PF03466	LysR substrate binding domain	LysR_substrate
UHGV-1368516_49	COG	COG0583	DNA-binding transcriptional regulator, LysR family	NA
UHGV-1368516_49	Structural annotation	PF03466, PF00126, MF_01233, NF040786, COG0583	NA	NA
UHGV-1368516_50	Structural annotation	TIGR01603, COG5437	NA	NA
UHGV-1368516_51	Structural annotation	PF05065, PF18998, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1368516_52	KOfam	K21511	GPC; capsid assembly protease [EC:3.4.21.-]	NA
UHGV-1368516_52	PHROG	phrog_53	head maturation protease	head and packaging
UHGV-1368516_52	UniRef90	UniRef90_A0A2L2WN07	Signal peptide peptidase SppA, 36K type	NA
UHGV-1368516_52	eggNOG-mapper	1236504.HMPREF2132_01855	serine-type peptidase activity	NA
UHGV-1368516_52	Pfam	PF01343	Peptidase family S49	Peptidase_S49
UHGV-1368516_52	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-1368516_52	Structural annotation	PF01343, MF_00444, TIGR00706, COG0616	NA	NA
UHGV-1368516_53	Structural annotation	PF11550, COG5437	NA	NA
UHGV-1368516_56	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-1368516_56	UniRef90	UniRef90_A0A353E7W6	MazG domain-containing protein	NA
UHGV-1368516_56	eggNOG-mapper	1236504.HMPREF2132_01780	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1368516_56	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1368516_56	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1368516_56	Structural annotation	TIGR03188, COG1694	NA	NA
UHGV-1368516_57	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-1368516_57	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1368516_57	UniRef90	UniRef90_A0A8F0WBE8	Flavin-dependent thymidylate synthase	NA
UHGV-1368516_57	eggNOG-mapper	1236504.HMPREF2132_01775	thymidylate synthase (FAD) activity	NA
UHGV-1368516_57	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-1368516_57	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-1368516_57	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1368516_58	KOfam	K00942	gmk, GUK1; guanylate kinase [EC:2.7.4.8]	NA
UHGV-1368516_58	PHROG	phrog_1815	guanylate kinase	other
UHGV-1368516_58	UniRef90	UniRef90_A0A354WXC5	Guanylate kinase	NA
UHGV-1368516_58	eggNOG-mapper	1433126.BN938_1741	Guanylate kinase	NA
UHGV-1368516_58	Pfam	PF00625	Guanylate kinase	Guanylate_kin
UHGV-1368516_58	COG	COG0194	Guanylate kinase	NA
UHGV-1368516_58	Structural annotation	PF00625, MF_00328, TIGR03263, COG0194	NA	NA
UHGV-1368516_59	UniRef90	UniRef90_A0A2L2WND9	Primase C terminal 2	NA
UHGV-1368516_59	eggNOG-mapper	1236504.HMPREF2132_01765	Primase C terminal 2 (PriCT-2)	NA
UHGV-1368516_59	PADLOC	drt-cluster64	DRT	DRT
UHGV-1368516_59	Pfam	PF08800	BT4734-like, N-terminal domain	BT4734-like_N
UHGV-1368516_59	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1368516_59	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1368516_59	Structural annotation	PF08800, NF040562	NA	NA
UHGV-1368516_60	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-1368516_60	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-1368516_60	UniRef90	UniRef90_A0A2L2WS53	PhageMin_Tail domain-containing protein	NA
UHGV-1368516_60	eggNOG-mapper	1236504.HMPREF2132_01670	tail tape measure protein, TP901 family	NA
UHGV-1368516_60	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1368516_60	COG	COG5283	Phage-related tail protein	NA
UHGV-1368516_62	Structural annotation	PF20765	NA	NA
UHGV-1368516_63	UniRef90	UniRef90_UPI001C2BD57F	phage holin family protein	NA
UHGV-1368516_63	eggNOG-mapper	457424.BFAG_02443	NA	NA
UHGV-1368516_63	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1368516_63	Structural annotation	TIGR01593	NA	NA
UHGV-1368516_67	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1368516_67	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1368516_67	UniRef90	UniRef90_A0A2L2WN54	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1368516_67	eggNOG-mapper	762982.HMPREF9442_01221	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1368516_67	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1368516_67	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1368516_68	PHROG	phrog_799	DNA methyltransferase	other
UHGV-1368516_68	UniRef90	UniRef90_A0A096B9T1	Conjugal transfer protein	NA
UHGV-1368516_68	eggNOG-mapper	1236504.HMPREF2132_01885	DNA restriction-modification system	NA
UHGV-1368516_68	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1368516_68	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-1368516_70	eggNOG-mapper	1002367.HMPREF0673_02207	NA	NA
UHGV-1368516_70	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1368516_77	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-1368516_77	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-1368516_77	UniRef90	UniRef90_A0A2D4QWR3	Beta sliding clamp	NA
UHGV-1368516_77	eggNOG-mapper	755732.Fluta_2407	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-1368516_77	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-1368516_77	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-1368516_77	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-1368516_77	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-1368516_77	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-1368516_80	PHROG	phrog_35807	NA	unknown function
UHGV-1368516_80	eggNOG-mapper	357276.EL88_12625	RNA polymerase activity	NA
UHGV-1368516_80	COG	COG0085	DNA-directed RNA polymerase, beta subunit/140 kD subunit	NA
UHGV-1368516_80	Structural annotation	PF14902	NA	NA
UHGV-1368516_81	UniRef90	UniRef90_A0A096AGU9	FHA domain-containing protein	NA
UHGV-1368516_81	eggNOG-mapper	1236504.HMPREF2132_01700	DNA primase activity	NA
UHGV-1368516_81	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1368516_81	Structural annotation	PF05272, PF01807, MF_00974, MF_00016, NF005477, COG3378, COG0358	NA	NA
UHGV-1368516_83	PHROG	phrog_255	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1368516_83	UniRef90	UniRef90_A0A355U3Z6	NA	NA
UHGV-1368516_83	eggNOG-mapper	1236504.HMPREF2132_01690	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease	NA
UHGV-1368516_83	Pfam	PF16473	3'-5' exoribonuclease Rv2179c-like domain	Rv2179c-like
UHGV-1368516_83	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-1368516_83	Structural annotation	PF16473, MF_00157, TIGR01298, COG5018	NA	NA
UHGV-1368516_85	Structural annotation	COG3655	NA	NA
UHGV-1368516_86	Structural annotation	PF17457	NA	NA
UHGV-1368516_89	UniRef90	UniRef90_A0A353E5D0	Rep_3 domain-containing protein (Fragment)	NA
UHGV-1368516_89	eggNOG-mapper	1122983.BAJY01000004_gene1777	Initiator RepB protein	NA
UHGV-1368516_89	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-1368516_89	Structural annotation	PF20964, PF01051, NF038290, COG5527	NA	NA
UHGV-1368516_90	Structural annotation	PF12502, MF_02248	NA	NA
UHGV-1368516_91	Structural annotation	PF03869, NF010302, COG3905	NA	NA
UHGV-1368516_92	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1368516_92	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1368516_92	UniRef90	UniRef90_A0A095Z6L5	AAA_31 domain-containing protein	NA
UHGV-1368516_92	eggNOG-mapper	1236504.HMPREF2132_02105	CobQ CobB MinD ParA nucleotide binding domain	NA
UHGV-1368516_92	Pfam	PF13614	AAA domain	AAA_31
UHGV-1368516_92	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1368516_92	Structural annotation	PF13614, MF_00533, NF041283, COG1192	NA	NA
UHGV-1368516_93	KOfam	K01972	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	NA
UHGV-1368516_93	PHROG	phrog_3869	NAD-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-1368516_93	UniRef90	UniRef90_A0A2L2WS96	DNA ligase (NAD(+))	NA
UHGV-1368516_93	eggNOG-mapper	722438.MPNE_0413	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	NA
UHGV-1368516_93	Pfam	PF01653	NAD-dependent DNA ligase adenylation domain	DNA_ligase_aden
UHGV-1368516_93	Pfam	PF03120	NAD-dependent DNA ligase OB-fold domain	DNA_ligase_OB
UHGV-1368516_93	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-1368516_93	Structural annotation	PF01653, PF03120, MF_01588, NF005932, COG0272	NA	NA
UHGV-1368516_94	Structural annotation	PF06289, COG1582	NA	NA
UHGV-1368516_97	Structural annotation	PF12857	NA	NA
UHGV-1368516_99	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1368516_99	UniRef90	UniRef90_A0A419S8Y6	HTH cro/C1-type domain-containing protein	NA
UHGV-1368516_99	eggNOG-mapper	679937.Bcop_2150	Helix-turn-helix domain	NA
UHGV-1368516_99	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1368516_99	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1368516_99	Structural annotation	PF13560, TIGR03070, COG1396	NA	NA
UHGV-1368516_102	Structural annotation	PF12857	NA	NA
UHGV-1368516_105	Structural annotation	PF08863, TIGR02383, COG4568	NA	NA
UHGV-1368516_109	PHROG	phrog_37559	NA	unknown function
UHGV-1368516_110	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1368516_110	PHROG	phrog_5696	NA	unknown function
UHGV-1368516_110	UniRef90	UniRef90_A0A6L5XAE6	N-6 DNA methylase	NA
UHGV-1368516_110	eggNOG-mapper	997884.HMPREF1068_00007	COG0286 Type I restriction-modification system methyltransferase subunit	NA
UHGV-1368516_110	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1368516_110	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1368516_110	Structural annotation	COG0286	NA	NA