UHGV-1368733

Genome information

Genome length 28,237 bps

CDS count 36

Completeness 100.00% (complete)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-1368733
vOTU ID	vOTU-056294
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0202135
BioSample	SAMN02334033
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.69
Jumbo phage	No

Genome content
Genome length	28,237 bps
GC content	31.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	90.87%
Average CDS length	713.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1368733_2	PHROG	phrog_158	major tail protein	tail
UHGV-1368733_2	UniRef90	UniRef90_UPI0005906553	tail protein	NA
UHGV-1368733_2	eggNOG-mapper	1499683.CCFF01000017_gene2926	Phage tail tube protein, TTP	NA
UHGV-1368733_2	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1368733_3	UniRef90	UniRef90_UPI0016860472	NA	NA
UHGV-1368733_3	eggNOG-mapper	1123304.AQYA01000037_gene231	NA	NA
UHGV-1368733_3	Pfam	PF19591	NA	DUF6096
UHGV-1368733_3	Structural annotation	PF19591, TIGR01674	NA	NA
UHGV-1368733_4	PHROG	phrog_2066	NA	unknown function
UHGV-1368733_4	eggNOG-mapper	1499683.CCFF01000017_gene2924	NA	NA
UHGV-1368733_5	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1368733_5	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-1368733_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1368733_5	Structural annotation	PF20155, COG5281	NA	NA
UHGV-1368733_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1368733_7	UniRef90	UniRef90_A0A7V8A6H9	PblB	NA
UHGV-1368733_7	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1368733_8	PHROG	phrog_372	tail protein	tail
UHGV-1368733_8	eggNOG-mapper	552396.HMPREF0863_01449	NA	NA
UHGV-1368733_10	PHROG	phrog_13256	NA	unknown function
UHGV-1368733_10	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-1368733_11	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1368733_11	PHROG	phrog_1	integrase	integration and excision
UHGV-1368733_11	UniRef90	UniRef90_UPI001F1D22BF	tyrosine-type recombinase/integrase	NA
UHGV-1368733_11	eggNOG-mapper	545697.HMPREF0216_02226	Belongs to the 'phage' integrase family	NA
UHGV-1368733_11	Pfam	PF02899	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_1
UHGV-1368733_11	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1368733_11	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1368733_11	Structural annotation	PF00589, PF02899, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-1368733_12	Pfam	PF18903	NA	DUF5659
UHGV-1368733_12	Structural annotation	PF18903	NA	NA
UHGV-1368733_13	UniRef90	UniRef90_UPI00035BA76E	NA	NA
UHGV-1368733_13	Pfam	PF18903	NA	DUF5659
UHGV-1368733_13	Structural annotation	PF18903	NA	NA
UHGV-1368733_14	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1368733_20	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1368733_20	PHROG	phrog_20388	endolysin	lysis
UHGV-1368733_20	UniRef90	UniRef90_R6CYN5	SPOR domain-containing protein	NA
UHGV-1368733_20	eggNOG-mapper	1203606.HMPREF1526_01931	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1368733_20	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1368733_20	Pfam	PF05036	SPOR domain	SPOR
UHGV-1368733_20	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1368733_20	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1368733_21	PHROG	phrog_7344	terminase small subunit	head and packaging
UHGV-1368733_21	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-1368733_21	Structural annotation	PF13022	NA	NA
UHGV-1368733_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1368733_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1368733_22	UniRef90	UniRef90_UPI0018AA0488	PBSX family phage terminase large subunit	NA
UHGV-1368733_22	eggNOG-mapper	702450.CUW_0531	Phage terminase, large subunit, PBSX family	NA
UHGV-1368733_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1368733_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1368733_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1368733_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-1368733_22	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1368733_23	Structural annotation	PF21226, TIGR04183, COG2372	NA	NA
UHGV-1368733_25	NCBIFam	TIGR02167.1	bacterial surface protein 26-residue repeat	NA
UHGV-1368733_28	PHROG	phrog_24896	NA	unknown function
UHGV-1368733_28	UniRef90	UniRef90_A0A1Y4IGM8	PKD domain-containing protein	NA
UHGV-1368733_28	eggNOG-mapper	657322.FPR_22010	NA	NA
UHGV-1368733_28	Pfam	PF19789	NA	DUF6273
UHGV-1368733_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-1368733_29	UniRef90	UniRef90_A0A843HXP9	Phage portal protein	NA
UHGV-1368733_29	eggNOG-mapper	1280689.AUJC01000007_gene3320	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1368733_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1368733_29	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1368733_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1368733_30	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1368733_30	UniRef90	UniRef90_A0A6N3FUV3	Phage Mu protein F like protein	NA
UHGV-1368733_30	eggNOG-mapper	875454.BAEW01000002_gene479	Phage Mu protein F like protein	NA
UHGV-1368733_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1368733_30	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1368733_30	COG	COG2369	NA	NA
UHGV-1368733_30	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1368733_31	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1368733_31	UniRef90	UniRef90_UPI00085C378A	NA	NA
UHGV-1368733_31	eggNOG-mapper	1111134.HMPREF1253_1185	NA	NA
UHGV-1368733_31	Pfam	PF14265	NA	DUF4355
UHGV-1368733_31	Structural annotation	PF14265	NA	NA
UHGV-1368733_32	PHROG	phrog_544	major head protein	head and packaging
UHGV-1368733_32	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-1368733_32	eggNOG-mapper	642492.Clole_0972	NA	NA
UHGV-1368733_32	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1368733_33	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1368733_33	UniRef90	UniRef90_UPI000D717081	phage head-tail connector protein	NA
UHGV-1368733_33	eggNOG-mapper	1540257.JQMW01000009_gene3373	Phage gp6-like head-tail connector protein	NA
UHGV-1368733_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1368733_33	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1368733_34	eggNOG-mapper	1280689.AUJC01000007_gene3314	NA	NA
UHGV-1368733_34	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1368733_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1368733_35	UniRef90	UniRef90_A0A372SK22	HK97 gp10 family phage protein	NA
UHGV-1368733_35	eggNOG-mapper	1280689.AUJC01000007_gene3313	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1368733_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1368733_35	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1368733_35	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA