UHGV-1369539

Genome information

Genome length 53,036 bps

CDS count 63

Completeness 100.00% (complete)

geNomad score 0.9726

Prediction confidence Confident

Genome information
Genome ID	UHGV-1369539
vOTU ID	vOTU-056416
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0317883
BioSample	SAMEA4349750
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9726
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.04
Jumbo phage	No

Genome content
Genome length	53,036 bps
GC content	44.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	88.53%
Average CDS length	747.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1369539_1	KOfam	K01972	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	NA
UHGV-1369539_1	PHROG	phrog_3869	NAD-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-1369539_1	UniRef90	UniRef90_A0A6J5LJD8	DNA ligase (NAD(+))	NA
UHGV-1369539_1	eggNOG-mapper	391625.PPSIR1_27833	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	NA
UHGV-1369539_1	Pfam	PF01653	NAD-dependent DNA ligase adenylation domain	DNA_ligase_aden
UHGV-1369539_1	Pfam	PF03120	NAD-dependent DNA ligase OB-fold domain	DNA_ligase_OB
UHGV-1369539_1	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-1369539_2	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1369539_2	Pfam	PF10926	NA	DUF2800
UHGV-1369539_2	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1369539_3	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1369539_3	UniRef90	UniRef90_A0A7G5XKX7	Primase C-terminal domain-containing protein	NA
UHGV-1369539_3	eggNOG-mapper	240292.Ava_3094	Virulence-associated protein E	NA
UHGV-1369539_3	Pfam	PF08800	BT4734-like, N-terminal domain	BT4734-like_N
UHGV-1369539_3	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1369539_3	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1369539_9	PHROG	phrog_7245	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-1369539_9	UniRef90	UniRef90_A0A396GHV8	NA	NA
UHGV-1369539_9	eggNOG-mapper	653733.Selin_1430	nucleotidyltransferase activity	NA
UHGV-1369539_9	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-1369539_9	Pfam	PF18818	Zincin-like metallopeptidase	MPTase-PolyVal
UHGV-1369539_9	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-1369539_9	Structural annotation	PF18818, PF08401, COG4227	NA	NA
UHGV-1369539_24	KOfam	K15519	dck; deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74]	NA
UHGV-1369539_24	PHROG	phrog_761	thymidylate kinase	other
UHGV-1369539_24	UniRef90	UniRef90_A0A2E6H0H1	Deoxynucleoside kinase	NA
UHGV-1369539_24	eggNOG-mapper	5741.EDO76331	deoxycytidine kinase activity	NA
UHGV-1369539_24	Pfam	PF01712	Deoxynucleoside kinase	dNK
UHGV-1369539_24	COG	COG1428	Deoxyadenosine/deoxycytidine kinase	NA
UHGV-1369539_24	Structural annotation	PF01712, MF_00165, NF005923, COG1428	NA	NA
UHGV-1369539_25	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-1369539_25	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1369539_25	eggNOG-mapper	1538804.A0A0A1CM43_9CAUD	helicase activity	NA
UHGV-1369539_25	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1369539_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-1369539_29	eggNOG-mapper	1499683.CCFF01000017_gene2934	Phage portal protein, SPP1 family	NA
UHGV-1369539_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1369539_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1369539_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1369539_30	UniRef90	UniRef90_UPI001C2F4160	PBSX family phage terminase large subunit	NA
UHGV-1369539_30	eggNOG-mapper	268407.PWYN_15645	Terminase RNAseH like domain	NA
UHGV-1369539_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1369539_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1369539_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1369539_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-1369539_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1369539_31	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1369539_35	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1369539_35	PHROG	phrog_435	endolysin	lysis
UHGV-1369539_35	UniRef90	UniRef90_A0A1V1I364	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1369539_35	eggNOG-mapper	1274374.CBLK010000046_gene2600	AMIN domain	NA
UHGV-1369539_35	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1369539_35	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1369539_35	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1369539_41	PHROG	phrog_6	baseplate protein	tail
UHGV-1369539_41	UniRef90	UniRef90_A0A401I3B9	Phage tail protein	NA
UHGV-1369539_41	eggNOG-mapper	326425.lhe_1198	Baseplate J-like protein	NA
UHGV-1369539_41	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-1369539_41	COG	COG3299	NA	NA
UHGV-1369539_41	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-1369539_42	UniRef90	UniRef90_UPI001B225D9D	NA	NA
UHGV-1369539_42	Pfam	PF10934	NA	DUF2634
UHGV-1369539_42	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-1369539_44	PHROG	phrog_400	tail protein	tail
UHGV-1369539_44	eggNOG-mapper	139871.A9D9W5_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1369539_47	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1369539_47	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1369539_48	PHROG	phrog_365	tail protein	tail
UHGV-1369539_48	UniRef90	UniRef90_UPI001C11C261	phage tail tube protein	NA
UHGV-1369539_48	eggNOG-mapper	1122925.KB895382_gene3565	Phage tail tube protein	NA
UHGV-1369539_48	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1369539_49	PHROG	phrog_279	tail sheath	tail
UHGV-1369539_49	eggNOG-mapper	610130.Closa_1400	Phage tail sheath C-terminal domain	NA
UHGV-1369539_49	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-1369539_49	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1369539_54	PHROG	phrog_29	major head protein	head and packaging
UHGV-1369539_54	UniRef90	UniRef90_A0A1R0X062	Phage capsid protein	NA
UHGV-1369539_54	eggNOG-mapper	1415774.U728_828	Phage major capsid protein E	NA
UHGV-1369539_57	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-1369539_58	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1369539_58	UniRef90	UniRef90_A0A2U1JUL5	DNA polymerase B	NA
UHGV-1369539_58	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-1369539_58	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-1369539_58	Structural annotation	PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-1369539_63	KOfam	K01972	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	NA
UHGV-1369539_63	PHROG	phrog_3869	NAD-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-1369539_63	Pfam	PF01653	NAD-dependent DNA ligase adenylation domain	DNA_ligase_aden
UHGV-1369539_63	COG	COG0272	NAD-dependent DNA ligase	NA