UHGV-1370652

Genome information

Genome length 48,347 bps

CDS count 81

Completeness 100.00% (complete)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-1370652
vOTU ID	vOTU-045054
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0305562
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.44
Jumbo phage	No

Genome content
Genome length	48,347 bps
GC content	34.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	81
CDS density	92.82%
Average CDS length	559.22 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1370652_1	PHROG	phrog_1909	NA	unknown function
UHGV-1370652_2	KOfam	K09882	cobS; cobaltochelatase CobS [EC:6.6.1.2]	NA
UHGV-1370652_2	PHROG	phrog_249	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-1370652_2	UniRef90	UniRef90_A0A1W1UZM7	AAA domain (Dynein-related subfamily)	NA
UHGV-1370652_2	eggNOG-mapper	330395.Q30L55_9CAUD	ATPase activity	NA
UHGV-1370652_2	Pfam	PF07728	AAA domain (dynein-related subfamily)	AAA_5
UHGV-1370652_2	Structural annotation	PF07728, MF_00016, TIGR01650, COG0714	NA	NA
UHGV-1370652_3	Structural annotation	PF04347	NA	NA
UHGV-1370652_4	PHROG	phrog_6466	DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-1370652_4	UniRef90	UniRef90_A0A843GQD5	DNA_ligase_aden domain-containing protein	NA
UHGV-1370652_4	eggNOG-mapper	691965.D4P7L3_9CAUD	helicase activity	NA
UHGV-1370652_7	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1370652_7	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-1370652_8	Structural annotation	PF21138, NF009630, COG2375	NA	NA
UHGV-1370652_10	PHROG	phrog_2250	NA	unknown function
UHGV-1370652_11	Structural annotation	PF10922	NA	NA
UHGV-1370652_12	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-1370652_12	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-1370652_12	UniRef90	UniRef90_A0A1M5KFY9	Ribonuclease H	NA
UHGV-1370652_12	eggNOG-mapper	1121104.AQXH01000005_gene226	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-1370652_12	Pfam	PF00075	RNase H	RNase_H
UHGV-1370652_12	COG	COG0328	Ribonuclease HI	NA
UHGV-1370652_12	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-1370652_13	Structural annotation	PF14084	NA	NA
UHGV-1370652_17	PHROG	phrog_2412	NA	unknown function
UHGV-1370652_20	PHROG	phrog_16126	NA	unknown function
UHGV-1370652_20	eggNOG-mapper	665950.HMPREF1025_01978	NA	NA
UHGV-1370652_22	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1370652_22	eggNOG-mapper	665950.HMPREF1025_01374	NA	NA
UHGV-1370652_23	PHROG	phrog_419	NA	unknown function
UHGV-1370652_23	UniRef90	UniRef90_A0A4U9RIR3	NA	NA
UHGV-1370652_23	eggNOG-mapper	476272.RUMHYD_03324	NA	NA
UHGV-1370652_25	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1370652_25	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1370652_25	UniRef90	UniRef90_UPI00062AC209	ParB N-terminal domain-containing protein	NA
UHGV-1370652_25	eggNOG-mapper	173707.Q938L7_9CAUD	helicase activity	NA
UHGV-1370652_25	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1370652_25	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1370652_25	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-1370652_26	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-1370652_26	UniRef90	UniRef90_R6N9F6	Mycobacteriophage GP2 protein	NA
UHGV-1370652_26	eggNOG-mapper	484018.BACPLE_00678	NA	NA
UHGV-1370652_26	Structural annotation	PF00290, MF_01634, TIGR00432, COG0269	NA	NA
UHGV-1370652_27	KOfam	K09125	yhhQ; queuosine precursor transporter	NA
UHGV-1370652_27	PHROG	phrog_4899	NA	unknown function
UHGV-1370652_27	UniRef90	UniRef90_A5UKX3	Probable queuosine precursor transporter	NA
UHGV-1370652_27	eggNOG-mapper	420247.Msm_0646	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage	NA
UHGV-1370652_27	Pfam	PF02592	Putative vitamin uptake transporter	Vut_1
UHGV-1370652_27	NCBIFam	TIGR00697.1	queuosine precursor transporter	NA
UHGV-1370652_27	COG	COG1738	NA	NA
UHGV-1370652_27	HAMAP	MF_02088	Probable queuosine precursor transporter	NA
UHGV-1370652_27	Structural annotation	PF02592, MF_02088, TIGR00697, COG1738	NA	NA
UHGV-1370652_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1370652_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1370652_31	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-1370652_31	eggNOG-mapper	536232.CLM_2529	Phage terminase, large subunit, PBSX family	NA
UHGV-1370652_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1370652_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1370652_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1370652_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-1370652_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1370652_32	PHROG	phrog_959	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1370652_32	UniRef90	UniRef90_UPI001AAAF7A6	HNH endonuclease	NA
UHGV-1370652_32	eggNOG-mapper	525282.HMPREF0391_10156	HNH endonuclease	NA
UHGV-1370652_32	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1370652_32	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1370652_32	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-1370652_32	Structural annotation	PF13392, TIGR01453	NA	NA
UHGV-1370652_35	PHROG	phrog_443	holin	lysis
UHGV-1370652_35	UniRef90	UniRef90_A0A1I0BHU5	Phage r1t holin	NA
UHGV-1370652_35	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-1370652_35	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1370652_35	Structural annotation	PF16945	NA	NA
UHGV-1370652_36	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1370652_36	PHROG	phrog_435	endolysin	lysis
UHGV-1370652_36	UniRef90	UniRef90_UPI001915CE21	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1370652_36	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1370652_36	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1370652_36	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1370652_36	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1370652_36	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-1370652_37	PHROG	phrog_64	portal protein	head and packaging
UHGV-1370652_37	UniRef90	UniRef90_A0A843GSM3	Phage portal protein	NA
UHGV-1370652_37	eggNOG-mapper	1211817.CCAT010000049_gene2492	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1370652_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1370652_38	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-1370652_38	UniRef90	UniRef90_A0A1G9U003	Phage Mu protein F like protein	NA
UHGV-1370652_38	eggNOG-mapper	1582149.A0A0A8WEF5_9CAUD	Phage Mu protein F like protein	NA
UHGV-1370652_40	PHROG	phrog_1315	NA	unknown function
UHGV-1370652_40	Structural annotation	TIGR00310	NA	NA
UHGV-1370652_41	Structural annotation	MF_02110	NA	NA
UHGV-1370652_42	PHROG	phrog_909	major head protein	head and packaging
UHGV-1370652_42	UniRef90	UniRef90_A0A512PLH0	Putative structural protein-phage associated	NA
UHGV-1370652_42	eggNOG-mapper	1158607.UAU_01759	NA	NA
UHGV-1370652_42	Structural annotation	PF02924	NA	NA
UHGV-1370652_43	PHROG	phrog_29	major head protein	head and packaging
UHGV-1370652_43	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-1370652_43	eggNOG-mapper	1158612.I580_01912	Phage major capsid protein E	NA
UHGV-1370652_43	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1370652_43	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1370652_44	Structural annotation	PF07498	NA	NA
UHGV-1370652_45	PHROG	phrog_4020	NA	unknown function
UHGV-1370652_45	eggNOG-mapper	445335.CBN_3083	NA	NA
UHGV-1370652_46	PHROG	phrog_8435	NA	unknown function
UHGV-1370652_46	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1370652_47	eggNOG-mapper	1443122.Z958_05860	NA	NA
UHGV-1370652_47	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1370652_48	PHROG	phrog_7585	NA	unknown function
UHGV-1370652_48	eggNOG-mapper	536232.CLM_3438	NA	NA
UHGV-1370652_48	Structural annotation	PF05657, COG5003	NA	NA
UHGV-1370652_49	PHROG	phrog_6686	tail tube protein	tail
UHGV-1370652_49	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-1370652_49	eggNOG-mapper	748727.CLJU_c31250	NA	NA
UHGV-1370652_49	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1370652_50	PHROG	phrog_6280	NA	unknown function
UHGV-1370652_50	UniRef90	UniRef90_UPI001E3BEC7F	esterase	NA
UHGV-1370652_50	eggNOG-mapper	1443125.Z962_12410	NA	NA
UHGV-1370652_51	PHROG	phrog_6541	NA	unknown function
UHGV-1370652_52	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1370652_52	UniRef90	UniRef90_A0A174LYQ1	Phage-related minor tail protein	NA
UHGV-1370652_52	eggNOG-mapper	1304866.K413DRAFT_1234	tail tape measure protein	NA
UHGV-1370652_52	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1370652_52	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1370652_52	COG	COG5283	Phage-related tail protein	NA
UHGV-1370652_52	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1370652_53	PHROG	phrog_36410	NA	unknown function
UHGV-1370652_53	UniRef90	UniRef90_A0A8F4L931	Phage tail protein	NA
UHGV-1370652_53	eggNOG-mapper	1121423.JONT01000035_gene905	PFAM Phage tail protein	NA
UHGV-1370652_53	COG	COG4722	Phage-related protein YomH	NA
UHGV-1370652_53	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1370652_54	PHROG	phrog_538	minor tail protein	tail
UHGV-1370652_54	UniRef90	UniRef90_A0A843GTT7	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1370652_54	eggNOG-mapper	1120746.CCNL01000017_gene2788	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1370652_54	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1370652_54	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1370652_56	PHROG	phrog_1220	head protein	head and packaging
UHGV-1370652_56	eggNOG-mapper	1211817.CCAT010000079_gene1381	COG NOG18825 non supervised orthologous group	NA
UHGV-1370652_56	Structural annotation	PF16075	NA	NA
UHGV-1370652_59	PHROG	phrog_16490	NA	unknown function
UHGV-1370652_59	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-1370652_60	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-1370652_64	Structural annotation	PF06003, MF_01077, NF037951, COG1862	NA	NA
UHGV-1370652_66	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1370652_66	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1370652_66	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-1370652_66	eggNOG-mapper	436114.SYO3AOP1_0326	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-1370652_66	PADLOC	drt-UG29	DRT	DRT
UHGV-1370652_66	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1370652_66	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-1370652_66	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1370652_66	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-1370652_68	PHROG	phrog_1607	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1370652_68	Structural annotation	PF08804	NA	NA
UHGV-1370652_69	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-1370652_69	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1370652_69	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-1370652_69	eggNOG-mapper	224324.aq_1008	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-1370652_69	Pfam	PF02811	PHP domain	PHP
UHGV-1370652_69	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-1370652_69	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-1370652_69	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-1370652_69	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-1370652_69	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-1370652_69	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-1370652_71	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-1370652_72	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-1370652_72	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-1370652_72	UniRef90	UniRef90_A0A1F4XI68	Protein RecA	NA
UHGV-1370652_72	eggNOG-mapper	469616.FMAG_01147	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-1370652_72	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-1370652_72	COG	COG0468	RecA/RadA recombinase	NA
UHGV-1370652_72	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-1370652_73	Structural annotation	PF01775, MF_00273, NF010188, COG2157	NA	NA
UHGV-1370652_74	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-1370652_74	eggNOG-mapper	1499968.TCA2_4616	DNA catabolic process, exonucleolytic	NA
UHGV-1370652_74	COG	COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	NA
UHGV-1370652_74	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-1370652_79	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1370652_79	PHROG	phrog_5696	NA	unknown function
UHGV-1370652_79	UniRef90	UniRef90_A0A1Q6KSK2	Restriction endonuclease	NA
UHGV-1370652_79	eggNOG-mapper	665950.HMPREF1025_01959	N-6 DNA Methylase	NA
UHGV-1370652_79	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1370652_79	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1370652_79	Structural annotation	COG0286	NA	NA
UHGV-1370652_80	PHROG	phrog_159	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1370652_80	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-1370652_81	PHROG	phrog_1909	NA	unknown function