UHGV-1370871

Genome information

vOTU vOTU-002068

Genome length 57,156 bps

CDS count 95

Completeness 100.00% (complete)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-1370871
vOTU ID	vOTU-002068
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0326326
BioSample	SAMN00792098
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.21
Jumbo phage	No

Genome content
Genome length	57,156 bps
GC content	39.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	95
CDS density	88.02%
Average CDS length	533.18 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1370871_1	UniRef90	UniRef90_UPI001D008199	helix-turn-helix domain-containing protein	NA
UHGV-1370871_1	eggNOG-mapper	877411.JMMA01000002_gene1483	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1370871_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1370871_3	eggNOG-mapper	397290.C810_01347	NA	NA
UHGV-1370871_3	Structural annotation	PF18267	NA	NA
UHGV-1370871_7	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-1370871_8	PHROG	phrog_20016	NA	unknown function
UHGV-1370871_8	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1370871_8	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-1370871_8	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1370871_9	PHROG	phrog_16490	NA	unknown function
UHGV-1370871_9	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-1370871_10	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-1370871_11	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-1370871_13	KOfam	K14059	int; integrase	NA
UHGV-1370871_13	PHROG	phrog_1	integrase	integration and excision
UHGV-1370871_13	UniRef90	UniRef90_UPI001D00AE51	site-specific integrase	NA
UHGV-1370871_13	eggNOG-mapper	97139.C824_00125	Phage integrase family	NA
UHGV-1370871_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1370871_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1370871_13	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1370871_14	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-1370871_14	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-1370871_14	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-1370871_15	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1370871_15	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-1370871_15	UniRef90	UniRef90_A0A3R6JG61	Methyltransferase	NA
UHGV-1370871_15	eggNOG-mapper	981335.G4W934_9CAUD	N-methyltransferase activity	NA
UHGV-1370871_15	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-1370871_15	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1370871_15	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-1370871_16	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1370871_16	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1370871_16	UniRef90	UniRef90_UPI001C399578	Site-specific DNA-methyltransferase	NA
UHGV-1370871_16	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-1370871_16	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1370871_16	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1370871_16	COG	COG0863	DNA modification methylase	NA
UHGV-1370871_16	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1370871_17	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1370871_17	UniRef90	UniRef90_A0A6L6XK67	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1370871_17	eggNOG-mapper	1410650.JHWL01000037_gene617	sulfate reduction	NA
UHGV-1370871_17	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1370871_17	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-1370871_18	UniRef90	UniRef90_UPI001C02F342	NA	NA
UHGV-1370871_18	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-1370871_19	PHROG	phrog_8684	NA	unknown function
UHGV-1370871_19	UniRef90	UniRef90_A0A1Q6ETU5	YopX domain-containing protein	NA
UHGV-1370871_19	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-1370871_19	Pfam	PF09643	YopX protein	YopX
UHGV-1370871_19	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1370871_21	PHROG	phrog_21026	NA	unknown function
UHGV-1370871_24	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1370871_24	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1370871_24	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-1370871_24	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-1370871_24	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1370871_24	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1370871_24	COG	COG0305	Replicative DNA helicase	NA
UHGV-1370871_24	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1370871_25	PHROG	phrog_11769	NA	unknown function
UHGV-1370871_25	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-1370871_25	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-1370871_25	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1370871_25	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1370871_25	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-1370871_26	PHROG	phrog_19106	NA	unknown function
UHGV-1370871_26	UniRef90	UniRef90_A0A412EKN4	GIY-YIG nuclease family protein	NA
UHGV-1370871_26	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-1370871_26	Structural annotation	TIGR01453	NA	NA
UHGV-1370871_27	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1370871_27	UniRef90	UniRef90_A0A7U3T981	Helix-turn-helix DNA binding domain protein	NA
UHGV-1370871_27	eggNOG-mapper	1460635.JCM19038_3433	NA	NA
UHGV-1370871_30	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1370871_30	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1370871_30	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-1370871_30	eggNOG-mapper	397290.C810_01486	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-1370871_30	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1370871_30	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1370871_30	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1370871_31	UniRef90	UniRef90_R7JZ94	Excinuclease ABC C subunit domain protein	NA
UHGV-1370871_31	eggNOG-mapper	573061.Clocel_3554	GIY-YIG catalytic domain	NA
UHGV-1370871_31	Pfam	PF06467	MYM-type Zinc finger with FCS sequence motif	zf-FCS
UHGV-1370871_31	Structural annotation	PF19835, PF06467, MF_00773, TIGR01453, COG2075	NA	NA
UHGV-1370871_34	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1370871_34	UniRef90	UniRef90_UPI001904C527	recombinase RecT	NA
UHGV-1370871_34	eggNOG-mapper	537013.CLOSTMETH_01715	NA	NA
UHGV-1370871_34	Structural annotation	NF007351, COG3723	NA	NA
UHGV-1370871_37	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-1370871_39	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1370871_39	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1370871_39	UniRef90	UniRef90_A0A174JMG0	Chromosome segregation protein	NA
UHGV-1370871_39	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-1370871_39	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1370871_39	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1370871_41	PHROG	phrog_26861	NA	unknown function
UHGV-1370871_41	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-1370871_41	eggNOG-mapper	1120998.AUFC01000016_gene32	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-1370871_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1370871_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1370871_41	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-1370871_44	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1370871_44	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1370871_44	UniRef90	UniRef90_A0A1T5K3B0	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1370871_44	eggNOG-mapper	1123263.AUKY01000072_gene2107	BRO family, N-terminal domain	NA
UHGV-1370871_44	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1370871_44	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1370871_44	COG	COG3617	Prophage antirepressor	NA
UHGV-1370871_44	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1370871_47	UniRef90	UniRef90_A0A3R6TRW8	XRE family transcriptional regulator	NA
UHGV-1370871_47	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1370871_47	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1370871_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1370871_48	UniRef90	UniRef90_A0A1C5WLU7	Helix-turn-helix domain	NA
UHGV-1370871_48	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1370871_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1370871_48	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-1370871_52	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1370871_52	Structural annotation	NF040910	NA	NA
UHGV-1370871_53	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-1370871_54	eggNOG-mapper	742733.HMPREF9469_01801	NA	NA
UHGV-1370871_54	Structural annotation	PF14600	NA	NA
UHGV-1370871_55	PHROG	phrog_17196	kinase	other
UHGV-1370871_55	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-1370871_55	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-1370871_56	PHROG	phrog_18190	NA	unknown function
UHGV-1370871_56	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-1370871_56	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-1370871_56	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1370871_56	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1370871_57	PHROG	phrog_1194	NA	unknown function
UHGV-1370871_57	Pfam	PF20458	NA	DUF6711
UHGV-1370871_57	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1370871_58	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1370871_58	UniRef90	UniRef90_A0A1I0BKG6	BRO family, N-terminal domain	NA
UHGV-1370871_58	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-1370871_58	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1370871_58	COG	COG3617	Prophage antirepressor	NA
UHGV-1370871_58	Structural annotation	PF02498, COG3617	NA	NA
UHGV-1370871_59	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-1370871_59	eggNOG-mapper	1410624.JNKK01000088_gene2110	Bacterial Ig-like domain (group 2)	NA
UHGV-1370871_59	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-1370871_60	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1370871_60	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-1370871_60	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-1370871_60	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1370871_61	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1370871_61	UniRef90	UniRef90_A0A173UI60	Group I intron endonuclease	NA
UHGV-1370871_61	eggNOG-mapper	745718.JADT01000019_gene1515	Intron encoded nuclease repeat motif	NA
UHGV-1370871_61	PADLOC	HEase_00030	homing endonuclease	RM
UHGV-1370871_61	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-1370871_61	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-1370871_61	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-1370871_61	Structural annotation	PF07453, PF19835, PF04936, TIGR01453	NA	NA
UHGV-1370871_62	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1370871_62	UniRef90	UniRef90_A0A173UI54	Phage-related protein	NA
UHGV-1370871_62	eggNOG-mapper	1408437.JNJN01000010_gene1238	domain protein	NA
UHGV-1370871_62	COG	COG1511	NA	NA
UHGV-1370871_63	PHROG	phrog_14030	NA	unknown function
UHGV-1370871_63	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-1370871_63	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1370871_63	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1370871_66	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-1370871_66	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-1370871_67	Structural annotation	PF05657	NA	NA
UHGV-1370871_68	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-1370871_68	AcrCatalog	cluster_24841	NA	NA
UHGV-1370871_69	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1370871_70	PHROG	phrog_443	holin	lysis
UHGV-1370871_70	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-1370871_70	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-1370871_70	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1370871_70	Structural annotation	PF16945	NA	NA
UHGV-1370871_71	PHROG	phrog_4105	NA	unknown function
UHGV-1370871_71	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-1370871_72	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-1370871_73	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-1370871_73	Structural annotation	PF21169	NA	NA
UHGV-1370871_74	PHROG	phrog_544	major head protein	head and packaging
UHGV-1370871_74	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-1370871_74	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-1370871_74	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1370871_74	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1370871_76	PHROG	phrog_64	portal protein	head and packaging
UHGV-1370871_76	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-1370871_76	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1370871_76	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1370871_76	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1370871_77	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-1370871_78	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1370871_78	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-1370871_78	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-1370871_78	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1370871_78	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1370871_79	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1370871_79	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-1370871_79	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-1370871_79	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1370871_79	COG	COG5410	NA	NA
UHGV-1370871_79	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1370871_80	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-1370871_80	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-1370871_80	eggNOG-mapper	1235792.C808_00058	NA	NA
UHGV-1370871_81	UniRef90	UniRef90_R5CGZ9	DNA-directed RNA polymerase subunit alpha 2	NA
UHGV-1370871_81	eggNOG-mapper	1235802.C823_01840	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	NA
UHGV-1370871_81	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-1370871_81	COG	COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	NA
UHGV-1370871_81	Structural annotation	PF03118, NF005841	NA	NA
UHGV-1370871_83	PHROG	phrog_25639	NA	unknown function
UHGV-1370871_86	Structural annotation	PF04466	NA	NA
UHGV-1370871_89	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-1370871_90	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-1370871_90	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-1370871_90	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-1370871_90	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1370871_90	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1370871_90	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-1370871_91	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-1370871_92	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA