UHGV-1372057

Genome information

Genome length 36,090 bps

CDS count 46

Completeness 100.00% (complete)

geNomad score 0.9702

Prediction confidence Confident

Genome information
Genome ID	UHGV-1372057
vOTU ID	vOTU-002961
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0246193
BioSample	SAMEA2738040
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9702
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.39
Jumbo phage	No

Genome content
Genome length	36,090 bps
GC content	67.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	94.98%
Average CDS length	747.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1372057_3	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1372057_3	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1372057_3	UniRef90	UniRef90_A0A845QL44	DEAD/DEAH box helicase	NA
UHGV-1372057_3	eggNOG-mapper	568816.Acin_1355	SNF2 family	NA
UHGV-1372057_3	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1372057_3	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1372057_3	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1372057_5	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1372057_5	UniRef90	UniRef90_UPI00034AEF88	NA	NA
UHGV-1372057_5	eggNOG-mapper	1134413.ANNK01000054_gene2217	NA	NA
UHGV-1372057_5	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-1372057_5	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-1372057_6	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1372057_6	UniRef90	UniRef90_U5F801	VRR-NUC domain-containing protein	NA
UHGV-1372057_6	eggNOG-mapper	552396.HMPREF0863_01422	VRR-NUC domain protein	NA
UHGV-1372057_6	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-1372057_7	PHROG	phrog_236	nucleotide kinase	other
UHGV-1372057_7	UniRef90	UniRef90_UPI0009A6F1C6	NA	NA
UHGV-1372057_7	eggNOG-mapper	1340826.S5Z5D6_9CAUD	NA	NA
UHGV-1372057_7	Pfam	PF11753	NA	DUF3310
UHGV-1372057_8	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-1372057_8	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1372057_8	UniRef90	UniRef90_A0A249XNQ8	DNA polymerase I	NA
UHGV-1372057_8	eggNOG-mapper	1122918.KB907248_gene4511	DNA polymerase	NA
UHGV-1372057_8	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1372057_8	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1372057_8	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-1372057_12	PHROG	phrog_284	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1372057_12	UniRef90	UniRef90_A0A2Z5HCT1	Exonuclease	NA
UHGV-1372057_12	eggNOG-mapper	1156844.KB891852_gene3727	NA	NA
UHGV-1372057_12	Structural annotation	PF12850, PF01047, MF_00325, NF003118, COG1311	NA	NA
UHGV-1372057_20	Structural annotation	PF03422, NF033675	NA	NA
UHGV-1372057_22	Structural annotation	PF16990, NF033675	NA	NA
UHGV-1372057_23	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1372057_23	PHROG	phrog_4018	amidase	lysis
UHGV-1372057_23	UniRef90	UniRef90_UPI000CA0643E	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1372057_23	eggNOG-mapper	525246.HMPREF0058_0760	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1372057_23	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1372057_23	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1372057_23	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1372057_24	Structural annotation	PF14594, PF00041, PF16323, MF_04116, NF033848, COG3500, COG3401	NA	NA
UHGV-1372057_25	Structural annotation	PF20195, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1372057_26	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1372057_26	UniRef90	UniRef90_A0A7L8ZGE8	Tape measure protein	NA
UHGV-1372057_26	eggNOG-mapper	1120947.ATUX01000001_gene2001	tape measure	NA
UHGV-1372057_26	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1372057_26	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1372057_26	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1372057_26	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-1372057_27	PHROG	phrog_1326	tail assembly chaperone	tail
UHGV-1372057_27	UniRef90	UniRef90_A0A385D3U7	Tail assembly chaperone	NA
UHGV-1372057_27	eggNOG-mapper	1273125.Rrhod_1363	NA	NA
UHGV-1372057_28	PHROG	phrog_8595	tail assembly chaperone	tail
UHGV-1372057_28	UniRef90	UniRef90_A0A7L8ZFI4	Tail assembly chaperone	NA
UHGV-1372057_29	PHROG	phrog_117	major tail protein	tail
UHGV-1372057_29	UniRef90	UniRef90_A0A256BQX7	Phage tail protein	NA
UHGV-1372057_29	eggNOG-mapper	1416759.AYMR01000023_gene276	NA	NA
UHGV-1372057_29	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1372057_32	PHROG	phrog_501	head closure Hc1	connector
UHGV-1372057_32	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1372057_33	PHROG	phrog_442	head-tail adaptor	connector
UHGV-1372057_33	UniRef90	UniRef90_UPI0016747D08	mobile element protein	NA
UHGV-1372057_33	eggNOG-mapper	1348663.KCH_15310	NA	NA
UHGV-1372057_33	Structural annotation	TIGR02215	NA	NA
UHGV-1372057_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-1372057_36	UniRef90	UniRef90_A0A168FDG0	Phage capsid family protein	NA
UHGV-1372057_36	eggNOG-mapper	158787.BSCA_1006	Phage capsid family	NA
UHGV-1372057_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1372057_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1372057_36	COG	COG3740	Phage head maturation protease	NA
UHGV-1372057_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1372057_37	KOfam	K06904	NA	NA
UHGV-1372057_37	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1372057_37	UniRef90	UniRef90_A0A7Y7ILS2	HK97 family phage prohead protease	NA
UHGV-1372057_37	eggNOG-mapper	1394176.AWUO01000014_gene662	Caudovirus prohead serine protease	NA
UHGV-1372057_37	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1372057_37	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1372057_37	COG	COG3740	Phage head maturation protease	NA
UHGV-1372057_38	PHROG	phrog_2662	portal protein	head and packaging
UHGV-1372057_38	UniRef90	UniRef90_B5G836	PE-PGRS family protein	NA
UHGV-1372057_38	eggNOG-mapper	1348663.KCH_15260	Phage portal protein	NA
UHGV-1372057_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1372057_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1372057_38	Structural annotation	PF04860, MF_04135, TIGR01537, TIGR01641, COG4695	NA	NA
UHGV-1372057_40	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1372057_40	UniRef90	UniRef90_A0A1V9K963	Terminase	NA
UHGV-1372057_40	eggNOG-mapper	67275.JOAP01000043_gene7754	phage terminase	NA
UHGV-1372057_40	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1372057_40	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1372057_40	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1372057_40	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1372057_41	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1372057_41	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1372057_41	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1372057_43	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1372057_43	UniRef90	UniRef90_UPI0009EE24FB	virulence-associated E family protein	NA
UHGV-1372057_43	eggNOG-mapper	1262914.BN533_00796	Virulence-associated protein E	NA
UHGV-1372057_43	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1372057_43	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1372057_43	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-1372057_45	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-1372057_45	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1372057_45	UniRef90	UniRef90_UPI001BFC65DB	NA	NA
UHGV-1372057_45	eggNOG-mapper	266762.HQ36_02035	NA	NA
UHGV-1372057_45	Pfam	PF10926	NA	DUF2800
UHGV-1372057_45	COG	COG2887	RecB family exonuclease	NA
UHGV-1372057_45	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1372057_46	UniRef90	UniRef90_A0A2I1KID3	Peptidase	NA
UHGV-1372057_46	eggNOG-mapper	762963.HMPREF9056_01030	cell wall anchor domain protein	NA
UHGV-1372057_46	COG	COG3170	Type IV pilus assembly protein FimV	NA