UHGV-1372380

Genome information

Genome length 36,919 bps

CDS count 54

Completeness 100.00% (complete)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-1372380
vOTU ID	vOTU-056974
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0251774
BioSample	SAMEA3664978
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	6.87
Jumbo phage	No

Genome content
Genome length	36,919 bps
GC content	57.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	89.62%
Average CDS length	614.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1372380_2	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1372380_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1372380_2	UniRef90	UniRef90_A0A2U1BEG8	Helix-turn-helix protein	NA
UHGV-1372380_2	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-1372380_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1372380_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1372380_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1372380_5	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-1372380_6	PHROG	phrog_15773	NA	unknown function
UHGV-1372380_6	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-1372380_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1372380_8	Structural annotation	PF13744, NF007481, COG1476	NA	NA
UHGV-1372380_11	PHROG	phrog_14970	NA	unknown function
UHGV-1372380_11	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-1372380_11	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-1372380_11	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-1372380_11	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-1372380_11	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-1372380_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1372380_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1372380_12	UniRef90	UniRef90_A0A4Z0CEI8	Single-stranded DNA-binding protein	NA
UHGV-1372380_12	eggNOG-mapper	1074488.AGBX01000001_gene892	Single-strand binding protein family	NA
UHGV-1372380_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1372380_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1372380_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1372380_12	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1372380_13	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1372380_13	UniRef90	UniRef90_UPI0013778123	replisome organizer	NA
UHGV-1372380_13	eggNOG-mapper	1139219.I569_01402	DnaD domain protein	NA
UHGV-1372380_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1372380_13	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1372380_14	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1372380_14	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-1372380_14	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-1372380_18	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-1372380_20	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-1372380_20	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-1372380_20	UniRef90	UniRef90_A0A5C7QA78	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-1372380_20	eggNOG-mapper	521098.Aaci_1081	sigma factor activity	NA
UHGV-1372380_20	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-1372380_20	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1372380_20	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1372380_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1372380_20	Structural annotation	PF04542, MF_00961, TIGR02835, COG1191	NA	NA
UHGV-1372380_22	PHROG	phrog_474	phosphofructokinase	other
UHGV-1372380_22	UniRef90	UniRef90_K1TIM3	NA	NA
UHGV-1372380_22	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-1372380_22	Pfam	PF19905	NA	DUF6378
UHGV-1372380_22	Structural annotation	PF19905	NA	NA
UHGV-1372380_23	UniRef90	UniRef90_A0A2U1CD16	PBECR3 domain-containing protein	NA
UHGV-1372380_23	eggNOG-mapper	1519439.JPJG01000011_gene53	NA	NA
UHGV-1372380_24	eggNOG-mapper	693746.OBV_01600	NA	NA
UHGV-1372380_26	PHROG	phrog_962	holin	lysis
UHGV-1372380_26	UniRef90	UniRef90_A0A3R5XPP7	Phage holin	NA
UHGV-1372380_26	eggNOG-mapper	553973.CLOHYLEM_04415	Bacteriophage holin	NA
UHGV-1372380_26	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1372380_26	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1372380_26	COG	COG5546	NA	NA
UHGV-1372380_26	Structural annotation	COG5546	NA	NA
UHGV-1372380_27	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1372380_27	PHROG	phrog_9611	endolysin	lysis
UHGV-1372380_27	UniRef90	UniRef90_R5B1Z3	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1372380_27	eggNOG-mapper	97138.C820_00588	Ami_2	NA
UHGV-1372380_27	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1372380_27	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1372380_27	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1372380_28	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1372380_28	PHROG	phrog_5182	endolysin	lysis
UHGV-1372380_28	UniRef90	UniRef90_A0A7U9NEY0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1372380_28	eggNOG-mapper	1235798.C817_04079	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1372380_28	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1372380_28	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1372380_30	Structural annotation	PF04017, MF_01602, NF010922, COG0095	NA	NA
UHGV-1372380_31	UniRef90	UniRef90_A0A7X4ZPD3	Histidine kinase	NA
UHGV-1372380_31	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-1372380_32	PHROG	phrog_13589	NA	unknown function
UHGV-1372380_32	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-1372380_33	PHROG	phrog_31538	NA	unknown function
UHGV-1372380_34	PHROG	phrog_24267	NA	unknown function
UHGV-1372380_34	UniRef90	UniRef90_A0A7W9L221	Microcystin-dependent protein	NA
UHGV-1372380_34	eggNOG-mapper	508419.F8J176_9CAUD	peptidoglycan catabolic process	NA
UHGV-1372380_36	PHROG	phrog_38190	NA	unknown function
UHGV-1372380_36	eggNOG-mapper	762211.BSTEL_0610	NA	NA
UHGV-1372380_37	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1372380_38	Structural annotation	PF10651, NF038186	NA	NA
UHGV-1372380_39	PHROG	phrog_892	tail fiber protein	tail
UHGV-1372380_39	eggNOG-mapper	1408437.JNJN01000087_gene969	NA	NA
UHGV-1372380_39	Structural annotation	PF04582	NA	NA
UHGV-1372380_40	UniRef90	UniRef90_A0A4D7ASB8	NA	NA
UHGV-1372380_40	eggNOG-mapper	693746.OBV_01680	NA	NA
UHGV-1372380_40	Structural annotation	PF11134, MF_03027, NF010237, TIGR03511, COG2319	NA	NA
UHGV-1372380_41	eggNOG-mapper	1519439.JPJG01000011_gene57	NA	NA
UHGV-1372380_41	Structural annotation	PF11650	NA	NA
UHGV-1372380_42	PHROG	phrog_422	major head protein	head and packaging
UHGV-1372380_42	UniRef90	UniRef90_K1S1E0	Gp7 (Fragment)	NA
UHGV-1372380_42	eggNOG-mapper	693746.OBV_01700	NA	NA
UHGV-1372380_42	Pfam	PF13287	Fn3 associated	Fn3_assoc
UHGV-1372380_42	Structural annotation	PF19821, PF13287, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1372380_44	PHROG	phrog_156	portal protein	head and packaging
UHGV-1372380_44	eggNOG-mapper	693746.OBV_01670	NA	NA
UHGV-1372380_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1372380_46	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1372380_46	UniRef90	UniRef90_A0A1M5YHQ5	Phage terminase large subunit	NA
UHGV-1372380_46	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-1372380_46	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1372380_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-1372380_46	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1372380_48	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1372380_48	UniRef90	UniRef90_A0A8F2F0X6	Metallophosphoesterase	NA
UHGV-1372380_48	eggNOG-mapper	443254.Marpi_0340	metallophosphoesterase	NA
UHGV-1372380_48	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1372380_48	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-1372380_48	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-1372380_49	Structural annotation	PF16677	NA	NA
UHGV-1372380_50	PHROG	phrog_15863	NA	unknown function
UHGV-1372380_50	UniRef90	UniRef90_K1RTM4	DnaJ domain protein	NA
UHGV-1372380_50	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-1372380_50	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-1372380_50	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-1372380_51	Structural annotation	PF17917	NA	NA
UHGV-1372380_52	KOfam	K14059	int; integrase	NA
UHGV-1372380_52	PHROG	phrog_1	integrase	integration and excision
UHGV-1372380_52	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-1372380_52	eggNOG-mapper	411468.CLOSCI_00325	Belongs to the 'phage' integrase family	NA
UHGV-1372380_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1372380_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1372380_52	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1372380_54	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1372380_54	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1372380_54	UniRef90	UniRef90_R5AVU4	CI-like repressor	NA
UHGV-1372380_54	eggNOG-mapper	1869.MB27_26960	DNA-binding helix-turn-helix protein	NA
UHGV-1372380_54	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1372380_54	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1372380_54	Structural annotation	PF01381, NF041951, COG1476	NA	NA