UHGV-1373597

Genome information

vOTU vOTU-001922

Genome length 35,320 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9685

Prediction confidence Confident

Genome information
Genome ID	UHGV-1373597
vOTU ID	vOTU-001922
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0241566
BioSample	SAMN02334033
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9685
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.78
Jumbo phage	No

Genome content
Genome length	35,320 bps
GC content	33.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	92.25%
Average CDS length	574.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1373597_4	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-1373597_4	PHROG	phrog_5696	NA	unknown function
UHGV-1373597_4	UniRef90	UniRef90_UPI001C95665A	N-6 DNA methylase	NA
UHGV-1373597_4	eggNOG-mapper	102125.Xen7305DRAFT_00024020	Type I restriction-modification system methyltransferase subunit	NA
UHGV-1373597_4	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-1373597_4	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-1373597_4	Structural annotation	PF13679, MF_02126, TIGR00497, COG0286	NA	NA
UHGV-1373597_6	PHROG	phrog_15863	NA	unknown function
UHGV-1373597_6	UniRef90	UniRef90_A0A415YCN0	J domain-containing protein	NA
UHGV-1373597_6	eggNOG-mapper	1410632.JHWW01000012_gene90	DnaJ molecular chaperone homology domain	NA
UHGV-1373597_6	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-1373597_7	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1373597_8	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1373597_8	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1373597_8	UniRef90	UniRef90_A0A843GSP6	ATP-binding protein	NA
UHGV-1373597_8	eggNOG-mapper	320840.Q4ZC96_9CAUD	IstB-like ATP binding protein	NA
UHGV-1373597_8	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1373597_8	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-1373597_10	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1373597_10	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1373597_10	Structural annotation	MF_01020, NF001610, COG0140	NA	NA
UHGV-1373597_14	KOfam	K03700	recU; recombination protein U	NA
UHGV-1373597_14	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1373597_14	UniRef90	UniRef90_A0A7X4ZEB9	Holliday junction resolvase RecU	NA
UHGV-1373597_14	eggNOG-mapper	1232447.BAHW02000015_gene1044	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1373597_14	Pfam	PF03838	Recombination protein U	RecU
UHGV-1373597_14	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-1373597_18	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1373597_18	UniRef90	UniRef90_A0A3D5KI23	DNA modification methylase (Fragment)	NA
UHGV-1373597_18	eggNOG-mapper	748727.CLJU_c03480	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1373597_18	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1373597_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1373597_18	COG	COG0863	DNA modification methylase	NA
UHGV-1373597_18	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-1373597_19	KOfam	K21527	mom; adenine modification enzyme [EC:2.3.1.-]	NA
UHGV-1373597_19	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-1373597_19	UniRef90	UniRef90_UPI000FDA95A5	protein Mom	NA
UHGV-1373597_19	eggNOG-mapper	1122931.AUAE01000005_gene3268	NA	NA
UHGV-1373597_19	Structural annotation	PF16092, MF_02210, NF007025, COG0456	NA	NA
UHGV-1373597_20	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1373597_20	Structural annotation	PF07141	NA	NA
UHGV-1373597_21	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-1373597_21	PHROG	phrog_465	endolysin	lysis
UHGV-1373597_21	UniRef90	UniRef90_S3L7N7	Peptidase_M15_4 domain-containing protein	NA
UHGV-1373597_21	eggNOG-mapper	381764.Fnod_0036	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-1373597_21	Pfam	PF02557	D-alanyl-D-alanine carboxypeptidase	VanY
UHGV-1373597_21	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-1373597_21	Structural annotation	PF05951, MF_01924, NF007557, COG2173	NA	NA
UHGV-1373597_22	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1373597_22	UniRef90	UniRef90_A0A417W8X1	HNH endonuclease	NA
UHGV-1373597_22	eggNOG-mapper	1536769.P40081_01050	HNH nucleases	NA
UHGV-1373597_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1373597_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1373597_22	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-1373597_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1373597_24	UniRef90	UniRef90_A0A3C1GZN3	Terminase large subunit	NA
UHGV-1373597_24	eggNOG-mapper	642492.Clole_1855	Phage terminase-like protein large subunit	NA
UHGV-1373597_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1373597_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1373597_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1373597_24	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1373597_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-1373597_25	UniRef90	UniRef90_UPI001E35F3F6	phage portal protein	NA
UHGV-1373597_25	eggNOG-mapper	1211817.CCAT010000007_gene1039	Portal protein	NA
UHGV-1373597_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1373597_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1373597_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1373597_26	KOfam	K06904	NA	NA
UHGV-1373597_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1373597_26	UniRef90	UniRef90_R6YQV2	Putative phage prohead protease	NA
UHGV-1373597_26	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-1373597_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1373597_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1373597_26	COG	COG3740	Phage head maturation protease	NA
UHGV-1373597_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1373597_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-1373597_27	UniRef90	UniRef90_A0A1M6DQ36	Phage major capsid protein, HK97 family	NA
UHGV-1373597_27	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-1373597_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1373597_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1373597_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1373597_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1373597_28	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1373597_29	UniRef90	UniRef90_A0A417W8T5	Head-tail adaptor protein	NA
UHGV-1373597_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1373597_30	Structural annotation	TIGR01725	NA	NA
UHGV-1373597_31	Structural annotation	PF05657	NA	NA
UHGV-1373597_32	PHROG	phrog_88	major tail protein	tail
UHGV-1373597_32	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-1373597_32	eggNOG-mapper	1121101.HMPREF1532_01961	Fn3 associated	NA
UHGV-1373597_32	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-1373597_32	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-1373597_32	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1373597_32	COG	COG1501	Alpha-glucosidase/xylosidase, GH31 family	NA
UHGV-1373597_33	PHROG	phrog_88	major tail protein	tail
UHGV-1373597_33	eggNOG-mapper	1408303.JNJJ01000024_gene3001	phage major tail protein, phi13 family	NA
UHGV-1373597_33	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1373597_33	COG	COG5492	NA	NA
UHGV-1373597_39	PHROG	phrog_23464	NA	unknown function
UHGV-1373597_39	eggNOG-mapper	926561.KB900622_gene636	phage tail tape measure protein	NA
UHGV-1373597_39	COG	COG5283	Phage-related tail protein	NA
UHGV-1373597_39	Structural annotation	COG5280	NA	NA
UHGV-1373597_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1373597_40	UniRef90	UniRef90_UPI001EE0B5EC	phage tail family protein	NA
UHGV-1373597_40	eggNOG-mapper	411473.RUMCAL_03181	Phage tail protein	NA
UHGV-1373597_40	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1373597_40	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1373597_41	PHROG	phrog_538	minor tail protein	tail
UHGV-1373597_41	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1373597_41	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1373597_42	PHROG	phrog_1220	head protein	head and packaging
UHGV-1373597_42	eggNOG-mapper	394503.Ccel_0827	NA	NA
UHGV-1373597_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1373597_44	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1373597_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1373597_44	UniRef90	UniRef90_W7BUZ8	Putative HTH-type transcriptional regulator	NA
UHGV-1373597_44	eggNOG-mapper	1121289.JHVL01000084_gene1573	SMART helix-turn-helix domain protein	NA
UHGV-1373597_44	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1373597_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1373597_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1373597_44	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1373597_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1373597_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1373597_46	UniRef90	UniRef90_A0A7T3V418	Single-stranded DNA-binding protein	NA
UHGV-1373597_46	eggNOG-mapper	1125699.HMPREF9194_01139	Single-stranded DNA-binding protein	NA
UHGV-1373597_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1373597_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1373597_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1373597_46	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1373597_46	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-1373597_47	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1373597_47	UniRef90	UniRef90_A0A843HNW3	ERF family protein	NA
UHGV-1373597_47	eggNOG-mapper	1095743.HMPREF1054_1927	ERF superfamily	NA
UHGV-1373597_47	Pfam	PF04404	ERF superfamily	ERF
UHGV-1373597_49	PHROG	phrog_674	NA	unknown function
UHGV-1373597_49	UniRef90	UniRef90_U1GYX7	PF07083 family protein	NA
UHGV-1373597_49	eggNOG-mapper	754027.HMPREF9554_00708	NA	NA
UHGV-1373597_49	Pfam	PF07083	NA	DUF1351
UHGV-1373597_49	Structural annotation	PF07083	NA	NA
UHGV-1373597_50	eggNOG-mapper	754027.HMPREF9554_00222	NA	NA
UHGV-1373597_50	Structural annotation	PF16784	NA	NA
UHGV-1373597_53	eggNOG-mapper	1125725.HMPREF1325_1313	NA	NA
UHGV-1373597_57	PHROG	phrog_4707	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1373597_57	UniRef90	UniRef90_J4A1W7	Phage replication protein	NA
UHGV-1373597_57	eggNOG-mapper	1234679.BN424_3315	NA	NA
UHGV-1373597_57	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1373597_57	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1373597_57	Structural annotation	NF040939, COG3355	NA	NA