UHGV-1374896

Genome information

Genome length 70,967 bps

CDS count 84

Completeness 100.00% (complete)

geNomad score 0.9327

Prediction confidence Confident

Genome information
Genome ID	UHGV-1374896
vOTU ID	vOTU-000370
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0345182
BioSample	SAMEA2738007
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9327
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.75
Jumbo phage	No

Genome content
Genome length	70,967 bps
GC content	46.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	84
CDS density	87.18%
Average CDS length	741.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1374896_2	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1374896_2	UniRef90	UniRef90_A7IYD7	Gp70	NA
UHGV-1374896_2	eggNOG-mapper	384848.A7IYD7_9CAUD	AAA domain	NA
UHGV-1374896_2	Pfam	PF13479	AAA domain	AAA_24
UHGV-1374896_2	Structural annotation	PF13479, MF_00350, TIGR01618, COG2874	NA	NA
UHGV-1374896_3	PHROG	phrog_9460	methyltransferase	other
UHGV-1374896_3	eggNOG-mapper	384848.A7IYD6_9CAUD	NA	NA
UHGV-1374896_5	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-1374896_5	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1374896_5	UniRef90	UniRef90_A0A4Y6EL94	DNA-directed DNA polymerase	NA
UHGV-1374896_5	eggNOG-mapper	319522.G8EJR5_9CAUD	Bacterial DNA polymerase III alpha subunit	NA
UHGV-1374896_5	Pfam	PF02811	PHP domain	PHP
UHGV-1374896_5	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-1374896_5	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-1374896_5	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-1374896_6	PHROG	phrog_1981	NA	unknown function
UHGV-1374896_6	eggNOG-mapper	1458711.X2KRK8_9CAUD	nucleic acid binding	NA
UHGV-1374896_8	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-1374896_8	PHROG	phrog_1156	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1374896_8	UniRef90	UniRef90_A0A4Y6EMH8	DNA primase/polymerase	NA
UHGV-1374896_8	eggNOG-mapper	384848.A7IYC5_9CAUD	hydrolase activity	NA
UHGV-1374896_8	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-1374896_8	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-1374896_8	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1374896_9	PHROG	phrog_3428	holin	lysis
UHGV-1374896_10	KOfam	K03791	K03791; putative chitinase	NA
UHGV-1374896_10	PHROG	phrog_1519	endolysin	lysis
UHGV-1374896_10	UniRef90	UniRef90_A0A127NVX2	Peptidase C39-like family protein	NA
UHGV-1374896_10	eggNOG-mapper	384848.A7IYC3_9CAUD	chitin catabolic process	NA
UHGV-1374896_10	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-1374896_10	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-1374896_11	PHROG	phrog_12076	NA	unknown function
UHGV-1374896_12	PHROG	phrog_20965	NA	unknown function
UHGV-1374896_13	PHROG	phrog_19576	NA	unknown function
UHGV-1374896_13	UniRef90	UniRef90_A7IYB9	Gp48	NA
UHGV-1374896_13	eggNOG-mapper	384848.A7IYB9_9CAUD	NA	NA
UHGV-1374896_14	PHROG	phrog_110	minor tail protein	tail
UHGV-1374896_14	UniRef90	UniRef90_A0A4Y6EKH5	Minor tail protein	NA
UHGV-1374896_14	eggNOG-mapper	384848.A7IYB8_9CAUD	NA	NA
UHGV-1374896_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1374896_15	PHROG	phrog_106	minor tail protein	tail
UHGV-1374896_15	UniRef90	UniRef90_A7IYB7	Gp46	NA
UHGV-1374896_15	eggNOG-mapper	384848.A7IYB7_9CAUD	NA	NA
UHGV-1374896_16	PHROG	phrog_6090	tail length tape measure protein	tail
UHGV-1374896_16	UniRef90	UniRef90_A7IYB6	Putative tail measure protein	NA
UHGV-1374896_16	eggNOG-mapper	1348662.CARG_02640	heme binding	NA
UHGV-1374896_16	COG	COG3953	SLT domain protein	NA
UHGV-1374896_17	PHROG	phrog_2624	tail assembly chaperone	tail
UHGV-1374896_19	PHROG	phrog_26941	tail protein	tail
UHGV-1374896_20	PHROG	phrog_476	major tail protein	tail
UHGV-1374896_20	UniRef90	UniRef90_A0A4Y6EL77	Major tail protein	NA
UHGV-1374896_20	eggNOG-mapper	384848.A7IYA9_9CAUD	peptidase activity	NA
UHGV-1374896_23	PHROG	phrog_19417	NA	unknown function
UHGV-1374896_24	PHROG	phrog_20694	NA	unknown function
UHGV-1374896_24	UniRef90	UniRef90_A7IYA5	Gp34	NA
UHGV-1374896_26	PHROG	phrog_29	major head protein	head and packaging
UHGV-1374896_26	UniRef90	UniRef90_A0A4Y6EKH1	Major capsid protein	NA
UHGV-1374896_26	eggNOG-mapper	384848.A7IYA3_9CAUD	Phage major capsid protein E	NA
UHGV-1374896_26	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1374896_26	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-1374896_27	PHROG	phrog_3583	head decoration	head and packaging
UHGV-1374896_27	UniRef90	UniRef90_A7IYA2	Putative minor capsid protein	NA
UHGV-1374896_28	PHROG	phrog_26148	NA	unknown function
UHGV-1374896_29	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-1374896_29	UniRef90	UniRef90_A7IYA0	Putative head protein	NA
UHGV-1374896_29	eggNOG-mapper	384848.A7IYA0_9CAUD	NA	NA
UHGV-1374896_30	PHROG	phrog_104	portal protein	head and packaging
UHGV-1374896_30	UniRef90	UniRef90_A0A4Y6EL66	Portal protein	NA
UHGV-1374896_30	eggNOG-mapper	384848.A7IY99_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1374896_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1374896_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1374896_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1374896_31	UniRef90	UniRef90_A0A3G3LWS3	Terminase large subunit	NA
UHGV-1374896_31	eggNOG-mapper	384848.A7IY98_9CAUD	Phage Terminase	NA
UHGV-1374896_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1374896_32	PHROG	phrog_13218	NA	unknown function
UHGV-1374896_33	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-1374896_33	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-1374896_33	UniRef90	UniRef90_UPI000305AC93	FAD-dependent thymidylate synthase	NA
UHGV-1374896_33	eggNOG-mapper	525268.HMPREF0308_2049	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-1374896_33	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-1374896_33	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-1374896_33	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-1374896_35	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1374896_35	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1374896_35	UniRef90	UniRef90_A0A496MTX7	Oxidoreductase	NA
UHGV-1374896_35	eggNOG-mapper	1121370.AQUY01000001_gene1017	AntA/AntB antirepressor	NA
UHGV-1374896_35	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1374896_35	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1374896_35	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1374896_35	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1374896_40	Pfam	PF19905	NA	DUF6378
UHGV-1374896_43	PHROG	phrog_226	minor tail protein	tail
UHGV-1374896_43	UniRef90	UniRef90_A0A4Y6EKE7	Terminase small subunit	NA
UHGV-1374896_71	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1374896_71	UniRef90	UniRef90_B0MZV0	Methyltransf_11 domain-containing protein	NA
UHGV-1374896_71	eggNOG-mapper	445970.ALIPUT_02675	methyltransferase	NA
UHGV-1374896_71	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1374896_71	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1374896_71	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-1374896_71	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-1374896_79	KOfam	K00525	E1.17.4.1A, nrdA, nrdE; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]	NA
UHGV-1374896_79	PHROG	phrog_84	ribonucleoside-diphosphate reductase large subunit	DNA, RNA and nucleotide metabolism
UHGV-1374896_79	UniRef90	UniRef90_A0A1L7CUD5	Ribonucleoside-diphosphate reductase	NA
UHGV-1374896_79	eggNOG-mapper	1203622.HMPREF1290_00186	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides	NA
UHGV-1374896_79	Pfam	PF08343	Ribonucleotide reductase N-terminal	RNR_N
UHGV-1374896_79	Pfam	PF00317	Ribonucleotide reductase, all-alpha domain	Ribonuc_red_lgN
UHGV-1374896_79	Pfam	PF02867	Ribonucleotide reductase, barrel domain	Ribonuc_red_lgC
UHGV-1374896_79	NCBIFam	TIGR04170.1	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA
UHGV-1374896_79	COG	COG0209	Ribonucleotide reductase alpha subunit	NA
UHGV-1374896_79	Structural annotation	PF02867, MF_04026, TIGR04170, COG0209	NA	NA
UHGV-1374896_81	KOfam	K00526	E1.17.4.1B, nrdB, nrdF; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]	NA
UHGV-1374896_81	PHROG	phrog_86	ribonucleoside diphosphate reductase small subunit	DNA, RNA and nucleotide metabolism
UHGV-1374896_81	UniRef90	UniRef90_G8LPJ4	Ribonucleoside-diphosphate reductase subunit beta	NA
UHGV-1374896_81	eggNOG-mapper	1045856.EcWSU1_03491	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides	NA
UHGV-1374896_81	Pfam	PF00268	Ribonucleotide reductase, small chain	Ribonuc_red_sm
UHGV-1374896_81	NCBIFam	TIGR04171.1	class 1b ribonucleoside-diphosphate reductase subunit beta	NA
UHGV-1374896_81	COG	COG0208	Ribonucleotide reductase beta subunit, ferritin-like domain	NA
UHGV-1374896_81	Structural annotation	PF00268, MF_04028, NF006576, COG0208	NA	NA
UHGV-1374896_83	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1374896_83	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1374896_83	UniRef90	UniRef90_A0A4Y6EV47	DNA helicase	NA
UHGV-1374896_83	eggNOG-mapper	384848.A7IYE2_9CAUD	helicase activity	NA
UHGV-1374896_83	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1374896_83	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1374896_83	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1374896_83	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-1374896_84	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-1374896_84	PHROG	phrog_1218	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1374896_84	UniRef90	UniRef90_A7IYE0	Gp73	NA
UHGV-1374896_84	eggNOG-mapper	384848.A7IYE0_9CAUD	NA	NA
UHGV-1374896_84	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-1374896_84	Structural annotation	PF12705, TIGR00372, COG2887	NA	NA