UHGV-1375761

Genome information

vOTU vOTU-001940

Genome length 42,731 bps

CDS count 75

Completeness 100.00% (complete)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-1375761
vOTU ID	vOTU-001940
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0283028
BioSample	SAMN03418268
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.5
Jumbo phage	No

Genome content
Genome length	42,731 bps
GC content	55.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	89.47%
Average CDS length	514.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1375761_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1375761_1	PHROG	phrog_95	integrase	integration and excision
UHGV-1375761_1	UniRef90	UniRef90_A0A810Q5V8	Integrase	NA
UHGV-1375761_1	eggNOG-mapper	525254.HMPREF0072_1329	Resolvase, N terminal domain	NA
UHGV-1375761_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1375761_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-1375761_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1375761_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1375761_1	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-1375761_2	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-1375761_3	PHROG	phrog_28802	NA	unknown function
UHGV-1375761_3	Structural annotation	PF12510	NA	NA
UHGV-1375761_4	PHROG	phrog_20016	NA	unknown function
UHGV-1375761_4	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1375761_4	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-1375761_4	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1375761_5	PHROG	phrog_16490	NA	unknown function
UHGV-1375761_5	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1375761_6	PHROG	phrog_22984	NA	unknown function
UHGV-1375761_7	PHROG	phrog_21718	NA	unknown function
UHGV-1375761_7	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1375761_8	PHROG	phrog_3754	NA	unknown function
UHGV-1375761_8	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-1375761_11	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-1375761_11	Structural annotation	PF04545, MF_00674, NF008895, COG1342	NA	NA
UHGV-1375761_12	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-1375761_12	PHROG	phrog_18955	NA	unknown function
UHGV-1375761_12	UniRef90	UniRef90_UPI001C1061EB	D-Ala-D-Ala carboxypeptidase family metallohydrolase	NA
UHGV-1375761_12	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-1375761_12	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-1375761_12	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1375761_12	COG	COG3108	NA	NA
UHGV-1375761_12	Structural annotation	PF09992, PF08291, COG4632, COG3108	NA	NA
UHGV-1375761_13	PHROG	phrog_1129	holin	lysis
UHGV-1375761_13	UniRef90	UniRef90_A0A1C7FPV3	Enolase	NA
UHGV-1375761_13	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1375761_13	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1375761_13	Structural annotation	PF06946	NA	NA
UHGV-1375761_17	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-1375761_17	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1375761_17	Structural annotation	PF10651, NF033814, COG5456	NA	NA
UHGV-1375761_18	PHROG	phrog_23092	NA	unknown function
UHGV-1375761_18	eggNOG-mapper	1226322.HMPREF1545_02839	NA	NA
UHGV-1375761_19	PHROG	phrog_937	hemolysin	other
UHGV-1375761_19	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-1375761_22	PHROG	phrog_18725	NA	unknown function
UHGV-1375761_22	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-1375761_23	PHROG	phrog_13879	NA	unknown function
UHGV-1375761_23	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-1375761_23	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-1375761_24	PHROG	phrog_1194	NA	unknown function
UHGV-1375761_24	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-1375761_24	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1375761_25	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1375761_25	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-1375761_25	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-1375761_25	COG	COG1511	NA	NA
UHGV-1375761_25	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-1375761_26	PHROG	phrog_706	NA	unknown function
UHGV-1375761_26	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-1375761_26	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-1375761_26	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1375761_26	Structural annotation	PF06854	NA	NA
UHGV-1375761_27	PHROG	phrog_11299	NA	unknown function
UHGV-1375761_27	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-1375761_27	Structural annotation	PF10666	NA	NA
UHGV-1375761_28	PHROG	phrog_3099	NA	unknown function
UHGV-1375761_28	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-1375761_28	Structural annotation	TIGR02126	NA	NA
UHGV-1375761_29	PHROG	phrog_3266	tail completion	connector
UHGV-1375761_29	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1375761_29	Structural annotation	PF12691	NA	NA
UHGV-1375761_30	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1375761_30	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-1375761_30	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-1375761_30	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1375761_30	Structural annotation	PF11114	NA	NA
UHGV-1375761_31	PHROG	phrog_3366	NA	unknown function
UHGV-1375761_31	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-1375761_31	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1375761_32	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1375761_32	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-1375761_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-1375761_33	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-1375761_33	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-1375761_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1375761_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1375761_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1375761_33	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1375761_34	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1375761_34	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-1375761_35	Structural annotation	PF18152	NA	NA
UHGV-1375761_36	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1375761_36	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-1375761_36	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-1375761_36	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1375761_36	COG	COG2369	NA	NA
UHGV-1375761_36	Structural annotation	PF06152	NA	NA
UHGV-1375761_38	PHROG	phrog_8680	NA	unknown function
UHGV-1375761_38	UniRef90	UniRef90_A0A3R6D7I3	NA	NA
UHGV-1375761_38	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-1375761_38	Pfam	PF14386	NA	DUF4417
UHGV-1375761_38	Structural annotation	PF14386	NA	NA
UHGV-1375761_39	PHROG	phrog_9479	NA	unknown function
UHGV-1375761_39	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-1375761_39	Structural annotation	PF15529	NA	NA
UHGV-1375761_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-1375761_40	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-1375761_40	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-1375761_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1375761_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1375761_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1375761_41	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1375761_41	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-1375761_41	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-1375761_41	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1375761_41	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1375761_41	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1375761_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-1375761_41	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1375761_42	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-1375761_42	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-1375761_42	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-1375761_42	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-1375761_42	Structural annotation	PF16677	NA	NA
UHGV-1375761_43	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-1375761_43	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-1375761_44	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-1375761_44	Structural annotation	PF13384	NA	NA
UHGV-1375761_45	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-1375761_45	PHROG	phrog_19890	NA	unknown function
UHGV-1375761_45	UniRef90	UniRef90_A0A645B8D1	SLT domain-containing protein	NA
UHGV-1375761_45	eggNOG-mapper	411468.CLOSCI_01470	Transglycosylase SLT domain	NA
UHGV-1375761_45	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1375761_45	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-1375761_45	Structural annotation	PF01464, MF_01616, NF011856, COG0741	NA	NA
UHGV-1375761_46	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1375761_46	UniRef90	UniRef90_UPI001A9BF0E5	NA	NA
UHGV-1375761_46	eggNOG-mapper	342113.DM82_1124	NA	NA
UHGV-1375761_46	Pfam	PF06356	NA	DUF1064
UHGV-1375761_46	Structural annotation	PF06356	NA	NA
UHGV-1375761_49	PHROG	phrog_474	phosphofructokinase	other
UHGV-1375761_49	UniRef90	UniRef90_A0A2V2EHL9	NA	NA
UHGV-1375761_49	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-1375761_49	Pfam	PF19905	NA	DUF6378
UHGV-1375761_49	Structural annotation	PF19905	NA	NA
UHGV-1375761_51	PHROG	phrog_9804	NA	unknown function
UHGV-1375761_51	UniRef90	UniRef90_A0A3D1LDS2	Inhibitor_G39P domain-containing protein	NA
UHGV-1375761_51	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-1375761_51	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1375761_51	Structural annotation	PF11417	NA	NA
UHGV-1375761_52	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1375761_52	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-1375761_52	Structural annotation	PF01978, NF000243, COG0735	NA	NA
UHGV-1375761_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1375761_53	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1375761_53	UniRef90	UniRef90_UPI0002EC42B8	single-stranded DNA-binding protein	NA
UHGV-1375761_53	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-1375761_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1375761_53	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1375761_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1375761_53	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1375761_53	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1375761_54	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1375761_54	UniRef90	UniRef90_UPI001C122365	HNH endonuclease	NA
UHGV-1375761_54	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-1375761_54	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1375761_55	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1375761_55	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1375761_55	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1375761_55	Structural annotation	PF05772	NA	NA
UHGV-1375761_56	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1375761_56	UniRef90	UniRef90_A0A3D1PJF8	Single-stranded DNA-binding protein	NA
UHGV-1375761_56	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-1375761_56	Pfam	PF04404	ERF superfamily	ERF
UHGV-1375761_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1375761_56	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1375761_57	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1375761_57	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-1375761_57	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-1375761_57	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1375761_57	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1375761_58	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-1375761_58	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-1375761_60	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-1375761_60	UniRef90	UniRef90_A0A1Y4MJF4	NA	NA
UHGV-1375761_60	eggNOG-mapper	1226322.HMPREF1545_03523	NA	NA
UHGV-1375761_60	Structural annotation	PF09392	NA	NA
UHGV-1375761_61	PHROG	phrog_1029	NA	unknown function
UHGV-1375761_61	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-1375761_61	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1375761_62	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1375761_62	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-1375761_62	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-1375761_68	eggNOG-mapper	1256908.HMPREF0373_02563	Helix-turn-helix domain	NA
UHGV-1375761_68	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1375761_68	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1375761_68	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1375761_70	UniRef90	UniRef90_A0A3D3Y0G5	HTH cro/C1-type domain-containing protein	NA
UHGV-1375761_70	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-1375761_74	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-1375761_74	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1375761_74	Structural annotation	PF12844, MF_00535, NF041677, COG1396	NA	NA
UHGV-1375761_75	eggNOG-mapper	1200557.JHWV01000001_gene302	Resolvase, N terminal domain	NA
UHGV-1375761_75	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1375761_75	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA