UHGV-1377633

Genome information

Genome length 22,133 bps

CDS count 32

Completeness 59.17% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-1377633
vOTU ID	vOTU-024784
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0162327
BioSample	SAMEA3136764
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35
Jumbo phage	No

Genome content
Genome length	22,133 bps
GC content	44.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	94.32%
Average CDS length	654.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1377633_1	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1377633_1	PHROG	phrog_26861	NA	unknown function
UHGV-1377633_1	UniRef90	UniRef90_A0A844DYA9	Single-stranded DNA-binding protein	NA
UHGV-1377633_1	eggNOG-mapper	1226325.HMPREF1548_02496	PFAM single-strand binding protein	NA
UHGV-1377633_1	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1377633_1	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1377633_2	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1377633_2	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-1377633_2	Structural annotation	PF21578	NA	NA
UHGV-1377633_5	PHROG	phrog_824	NA	unknown function
UHGV-1377633_5	UniRef90	UniRef90_A0A3A9C013	VRR-NUC domain-containing protein	NA
UHGV-1377633_5	eggNOG-mapper	1235792.C808_00622	VRR_NUC	NA
UHGV-1377633_6	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-1377633_6	UniRef90	UniRef90_A0A844DY24	NA	NA
UHGV-1377633_6	eggNOG-mapper	1235792.C808_00072	ParB-like nuclease domain	NA
UHGV-1377633_6	Pfam	PF12961	NA	DUF3850
UHGV-1377633_6	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1377633_7	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1377633_7	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1377633_7	UniRef90	UniRef90_A0A3A9C0A4	ParA family protein	NA
UHGV-1377633_7	eggNOG-mapper	411468.CLOSCI_00306	AAA domain	NA
UHGV-1377633_7	Pfam	PF13614	AAA domain	AAA_31
UHGV-1377633_7	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1377633_7	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-1377633_8	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1377633_8	PHROG	phrog_15982	NA	unknown function
UHGV-1377633_8	UniRef90	UniRef90_A0A3A9C156	ParB domain-containing protein	NA
UHGV-1377633_8	eggNOG-mapper	641107.CDLVIII_1319	ParB-like nuclease domain	NA
UHGV-1377633_8	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1377633_8	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1377633_9	eggNOG-mapper	471875.RUMLAC_01751	NA	NA
UHGV-1377633_10	PHROG	phrog_25754	NA	unknown function
UHGV-1377633_10	eggNOG-mapper	1196322.A370_02055	NA	NA
UHGV-1377633_10	Structural annotation	PF18195, MF_00257, NF041655, COG1923	NA	NA
UHGV-1377633_11	Structural annotation	PF15591, MF_00613, NF002745	NA	NA
UHGV-1377633_13	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1377633_13	UniRef90	UniRef90_A0A3A8UIM8	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-1377633_13	eggNOG-mapper	471875.RUMLAC_01752	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1377633_13	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1377633_13	Structural annotation	COG1724	NA	NA
UHGV-1377633_14	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1377633_14	PHROG	phrog_33232	NA	unknown function
UHGV-1377633_14	UniRef90	UniRef90_A0A3A8V214	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-1377633_14	eggNOG-mapper	471875.RUMLAC_01753	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-1377633_14	Pfam	PF21748	UPF0150-like	UPF0150
UHGV-1377633_14	Pfam	PF05534	HicB family	HicB
UHGV-1377633_14	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1377633_14	Structural annotation	PF15919, COG1598, COG4691	NA	NA
UHGV-1377633_15	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1377633_15	UniRef90	UniRef90_C4IGS7	Gp50 protein	NA
UHGV-1377633_15	eggNOG-mapper	632245.CLP_2621	HNH endonuclease	NA
UHGV-1377633_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1377633_16	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1377633_16	UniRef90	UniRef90_A0A844E2W1	Phage terminase small subunit P27 family	NA
UHGV-1377633_16	eggNOG-mapper	903814.ELI_3118	Phage terminase, small subunit	NA
UHGV-1377633_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1377633_16	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1377633_16	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1377633_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1377633_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1377633_17	UniRef90	UniRef90_A0A3A9C975	Terminase large subunit	NA
UHGV-1377633_17	eggNOG-mapper	1195236.CTER_5115	large subunit	NA
UHGV-1377633_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1377633_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1377633_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1377633_17	Structural annotation	PF03354, PF20441, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1377633_18	PHROG	phrog_2699	terminase large subunit	head and packaging
UHGV-1377633_18	eggNOG-mapper	903814.ELI_3117	Phage Terminase	NA
UHGV-1377633_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1377633_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-1377633_20	UniRef90	UniRef90_A0A3R5Y423	Phage portal protein	NA
UHGV-1377633_20	eggNOG-mapper	903814.ELI_3115	Phage portal protein	NA
UHGV-1377633_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1377633_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1377633_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1377633_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1377633_21	KOfam	K06904	NA	NA
UHGV-1377633_21	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1377633_21	UniRef90	UniRef90_A0A412BB99	HK97 family phage prohead protease	NA
UHGV-1377633_21	eggNOG-mapper	573061.Clocel_2438	Phage prohead protease, HK97 family	NA
UHGV-1377633_21	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1377633_21	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1377633_21	COG	COG3740	Phage head maturation protease	NA
UHGV-1377633_21	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1377633_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-1377633_22	UniRef90	UniRef90_A0A3A9C164	Phage major capsid protein	NA
UHGV-1377633_22	eggNOG-mapper	903814.ELI_3113	Phage capsid family	NA
UHGV-1377633_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1377633_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1377633_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1377633_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1377633_23	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1377633_23	UniRef90	UniRef90_A0A3R5YZ06	Phage gp6-like head-tail connector protein	NA
UHGV-1377633_23	eggNOG-mapper	394503.Ccel_2955	Phage gp6-like head-tail connector protein	NA
UHGV-1377633_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1377633_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1377633_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1377633_24	PHROG	phrog_25	head closure Hc1	connector
UHGV-1377633_24	UniRef90	UniRef90_A0A3A9CAN7	Head-tail adaptor protein	NA
UHGV-1377633_24	eggNOG-mapper	1567011.A0A0A7RUH8_9VIRU	Phage head-tail joining protein	NA
UHGV-1377633_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1377633_24	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1377633_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1377633_25	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1377633_25	UniRef90	UniRef90_UPI00164C40CD	HK97 gp10 family phage protein	NA
UHGV-1377633_25	eggNOG-mapper	195103.CPF_1581	Phage protein, HK97 gp10 family	NA
UHGV-1377633_25	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1377633_25	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1377633_26	PHROG	phrog_78	tail terminator	connector
UHGV-1377633_26	UniRef90	UniRef90_Q8SBP4	Gp10 protein	NA
UHGV-1377633_26	eggNOG-mapper	195103.CPF_1580	NA	NA
UHGV-1377633_26	Structural annotation	PF05657, COG3167	NA	NA
UHGV-1377633_27	PHROG	phrog_88	major tail protein	tail
UHGV-1377633_27	UniRef90	UniRef90_A0A412BAX6	Major tail protein	NA
UHGV-1377633_27	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-1377633_27	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1377633_27	COG	COG5492	NA	NA
UHGV-1377633_27	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1377633_28	PHROG	phrog_13494	NA	unknown function
UHGV-1377633_28	eggNOG-mapper	536233.CLO_2516	NA	NA
UHGV-1377633_29	PHROG	phrog_25901	NA	unknown function
UHGV-1377633_29	eggNOG-mapper	411468.CLOSCI_01498	NA	NA
UHGV-1377633_30	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1377633_30	UniRef90	UniRef90_A0A3R6A218	Phage tail tape measure protein	NA
UHGV-1377633_30	eggNOG-mapper	1235793.C809_01928	nuclear chromosome segregation	NA
UHGV-1377633_30	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1377633_30	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1377633_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1377633_31	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1377633_31	UniRef90	UniRef90_A0A3E2TNW7	Phage tail protein	NA
UHGV-1377633_31	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-1377633_31	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1377633_31	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1377633_31	COG	COG4722	Phage-related protein YomH	NA
UHGV-1377633_31	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1377633_32	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1377633_32	UniRef90	UniRef90_A0A3R6MRC7	Prophage_tail domain-containing protein	NA
UHGV-1377633_32	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-1377633_32	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1377633_32	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1377633_32	COG	COG4926	Phage-related protein	NA