UHGV-1377837

Genome information

vOTU vOTU-020040

Genome length 23,277 bps

CDS count 36

Completeness 55.14% (medium-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-1377837
vOTU ID	vOTU-020040
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0170567
BioSample	NA
Country	El Salvador
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.99
Jumbo phage	No

Genome content
Genome length	23,277 bps
GC content	56.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	93.13%
Average CDS length	606.17 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1377837_1	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-1377837_1	UniRef90	UniRef90_A0A2J4JSE0	NA	NA
UHGV-1377837_1	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-1377837_1	Pfam	PF19789	NA	DUF6273
UHGV-1377837_1	Structural annotation	PF19789, PF18911	NA	NA
UHGV-1377837_3	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-1377837_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-1377837_3	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-1377837_4	PHROG	phrog_3558	tail protein	tail
UHGV-1377837_4	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-1377837_4	eggNOG-mapper	1120933.ATUY01000002_gene164	Prophage endopeptidase tail	NA
UHGV-1377837_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1377837_4	COG	COG4926	Phage-related protein	NA
UHGV-1377837_4	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1377837_5	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-1377837_5	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-1377837_5	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-1377837_5	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1377837_5	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1377837_5	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1377837_5	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1377837_8	PHROG	phrog_885	major tail protein	tail
UHGV-1377837_8	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-1377837_8	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1377837_9	Structural annotation	PF13554	NA	NA
UHGV-1377837_10	PHROG	phrog_17977	NA	unknown function
UHGV-1377837_10	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-1377837_10	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1377837_12	PHROG	phrog_544	major head protein	head and packaging
UHGV-1377837_12	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-1377837_12	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1377837_12	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1377837_13	Structural annotation	PF06810	NA	NA
UHGV-1377837_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1377837_15	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-1377837_15	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1377837_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1377837_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1377837_18	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1377837_18	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-1377837_18	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1377837_18	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1377837_18	COG	COG2369	NA	NA
UHGV-1377837_18	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1377837_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-1377837_20	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-1377837_20	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-1377837_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1377837_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1377837_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1377837_21	PHROG	phrog_10250	NA	unknown function
UHGV-1377837_21	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-1377837_21	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-1377837_21	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1377837_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1377837_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1377837_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-1377837_21	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1377837_22	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-1377837_22	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-1377837_22	Structural annotation	PF04218	NA	NA
UHGV-1377837_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1377837_23	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-1377837_25	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1377837_25	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1377837_25	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1377837_25	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-1377837_25	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1377837_25	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1377837_25	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1377837_26	PHROG	phrog_3136	NA	unknown function
UHGV-1377837_26	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-1377837_26	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1377837_26	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1377837_26	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-1377837_27	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-1377837_27	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-1377837_27	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-1377837_29	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1377837_29	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-1377837_29	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1377837_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1377837_31	UniRef90	UniRef90_A0A845R8R0	NA	NA
UHGV-1377837_32	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-1377837_33	Structural annotation	PF11417	NA	NA
UHGV-1377837_34	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1377837_34	UniRef90	UniRef90_A0A890GZV9	Phage replisome organizer N-terminal domain-containing protein	NA
UHGV-1377837_34	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-1377837_34	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1377837_34	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1377837_34	Structural annotation	PF09681, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-1377837_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1377837_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1377837_35	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-1377837_35	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1377837_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1377837_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1377837_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1377837_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1377837_35	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA