UHGV-1378426

Genome information

Genome length 56,422 bps

CDS count 74

Completeness 99.90% (high-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-1378426
vOTU ID	vOTU-060084
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0324589
BioSample	SAMEA2738067
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.08
Jumbo phage	No

Genome content
Genome length	56,422 bps
GC content	59.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	74
CDS density	93.81%
Average CDS length	716.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1378426_1	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1378426_1	UniRef90	UniRef90_A0A059W6J5	HNH endonuclease	NA
UHGV-1378426_1	eggNOG-mapper	68570.DC74_4943	HNH nucleases	NA
UHGV-1378426_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1378426_15	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-1378426_15	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-1378426_15	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-1378426_16	eggNOG-mapper	1463858.JOHR01000028_gene89	NA	NA
UHGV-1378426_23	eggNOG-mapper	1150599.MPHLEI_19984	NA	NA
UHGV-1378426_39	PHROG	phrog_226	minor tail protein	tail
UHGV-1378426_40	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1378426_40	UniRef90	UniRef90_A0A1I0ETV3	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1378426_40	eggNOG-mapper	1410634.JHVD01000003_gene1841	Terminase	NA
UHGV-1378426_40	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1378426_40	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1378426_41	PHROG	phrog_104	portal protein	head and packaging
UHGV-1378426_41	UniRef90	UniRef90_A0A4Y8JRH7	Phage portal protein	NA
UHGV-1378426_41	eggNOG-mapper	1415166.NONO_c60710	NA	NA
UHGV-1378426_41	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1378426_42	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-1378426_42	UniRef90	UniRef90_A0A142K8Z1	Capsid morphogenesis F-Mu-like protein	NA
UHGV-1378426_42	eggNOG-mapper	1692.BMAGN_1443	NA	NA
UHGV-1378426_43	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1378426_43	UniRef90	UniRef90_UPI001685BC42	AAA family ATPase	NA
UHGV-1378426_43	eggNOG-mapper	1343740.M271_23330	HNH endonuclease	NA
UHGV-1378426_43	Pfam	PF13671	AAA domain	AAA_33
UHGV-1378426_43	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1378426_46	PHROG	phrog_29	major head protein	head and packaging
UHGV-1378426_46	UniRef90	UniRef90_A0A853EG41	Major capsid protein	NA
UHGV-1378426_46	eggNOG-mapper	1996.JOFO01000078_gene4185	Phage major capsid protein E	NA
UHGV-1378426_46	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1378426_46	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-1378426_51	Structural annotation	PF16807	NA	NA
UHGV-1378426_52	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1378426_55	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-1378426_55	eggNOG-mapper	10732.K4HY72_9CAUD	peptidoglycan catabolic process	NA
UHGV-1378426_56	Structural annotation	PF01105, NF033675	NA	NA
UHGV-1378426_57	Structural annotation	PF16346, PF17642, NF033848, COG4379	NA	NA
UHGV-1378426_59	UniRef90	UniRef90_A0A7H2BGB2	Spherulation-specific family 4 protein	NA
UHGV-1378426_59	eggNOG-mapper	68170.KL590553_gene5127	Spherulation-specific family 4	NA
UHGV-1378426_59	Pfam	PF12138	Spherulation-specific family 4	Spherulin4
UHGV-1378426_59	COG	COG1122	Energy-coupling factor transporter ATP-binding protein EcfA2	NA
UHGV-1378426_59	Structural annotation	PF12138, MF_01951, NF000738, COG1902	NA	NA
UHGV-1378426_60	KOfam	K13925	pfbA; plasmin and fibronectin-binding protein A	NA
UHGV-1378426_60	UniRef90	UniRef90_A0A7W4EAQ3	Endopolygalacturonase	NA
UHGV-1378426_60	eggNOG-mapper	1122179.KB890431_gene4228	Pectate lyase superfamily protein	NA
UHGV-1378426_60	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-1378426_60	COG	COG5434	Polygalacturonase	NA
UHGV-1378426_60	Structural annotation	PF12708, TIGR03808, COG3420	NA	NA
UHGV-1378426_62	UniRef90	UniRef90_UPI0006936F3E	malectin domain-containing carbohydrate-binding protein	NA
UHGV-1378426_62	eggNOG-mapper	553177.CAPSP0001_0878	NA	NA
UHGV-1378426_64	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1378426_64	PHROG	phrog_12609	endolysin	lysis
UHGV-1378426_64	UniRef90	UniRef90_A0A1S1CDP3	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1378426_64	eggNOG-mapper	691966.D4P733_9CAUD	peptidoglycan catabolic process	NA
UHGV-1378426_64	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1378426_64	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-1378426_64	Structural annotation	PF08460, PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1378426_66	PHROG	phrog_11324	nucleotide kinase	other
UHGV-1378426_66	Pfam	PF11753	NA	DUF3310
UHGV-1378426_67	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-1378426_67	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1378426_67	UniRef90	UniRef90_A0A249XNQ8	DNA polymerase I	NA
UHGV-1378426_67	eggNOG-mapper	1235798.C817_04117	DNA polymerase A domain	NA
UHGV-1378426_67	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-1378426_67	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1378426_67	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1378426_67	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-1378426_68	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1378426_68	UniRef90	UniRef90_UPI000554A1C5	NA	NA
UHGV-1378426_68	eggNOG-mapper	1408424.JHYI01000032_gene3844	NA	NA
UHGV-1378426_68	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-1378426_69	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1378426_69	eggNOG-mapper	1274524.BSONL12_06023	NA	NA
UHGV-1378426_69	Pfam	PF10926	NA	DUF2800
UHGV-1378426_69	COG	COG2887	RecB family exonuclease	NA
UHGV-1378426_70	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-1378426_70	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1378426_70	UniRef90	UniRef90_A0A5R9CKV3	NA	NA
UHGV-1378426_70	eggNOG-mapper	552396.HMPREF0863_00293	NA	NA
UHGV-1378426_70	Pfam	PF10926	NA	DUF2800
UHGV-1378426_70	COG	COG2887	RecB family exonuclease	NA
UHGV-1378426_70	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1378426_72	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1378426_72	UniRef90	UniRef90_A0A1Y3PHS5	Virulence-associated protein E	NA
UHGV-1378426_72	eggNOG-mapper	748727.CLJU_c36530	virulence-associated E family protein	NA
UHGV-1378426_72	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1378426_72	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1378426_72	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-1378426_73	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1378426_73	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1378426_73	UniRef90	UniRef90_A0A249XNR7	DNA helicase	NA
UHGV-1378426_73	eggNOG-mapper	883066.HMPREF9233_00589	SNF2 family N-terminal domain protein	NA
UHGV-1378426_73	PADLOC	DpdE_00010	DpdE	DPD
UHGV-1378426_73	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1378426_73	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1378426_73	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1378426_74	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1378426_74	UniRef90	UniRef90_A0A6J7X2A0	VRR-NUC domain containing protein	NA
UHGV-1378426_74	eggNOG-mapper	1321782.HMPREF1986_02254	VRR_NUC	NA
UHGV-1378426_74	Structural annotation	PF01870, MF_01490, NF011269, COG5321	NA	NA