UHGV-1378507

Genome information

vOTU vOTU-020949

Genome length 41,227 bps

CDS count 62

Completeness 68.19% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-1378507
vOTU ID	vOTU-020949
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0274983
BioSample	SAMEA3136703
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.65
Jumbo phage	No

Genome content
Genome length	41,227 bps
GC content	39.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	86.87%
Average CDS length	579.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1378507_1	Structural annotation	PF05657	NA	NA
UHGV-1378507_2	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-1378507_2	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-1378507_5	PHROG	phrog_9589	endolysin	lysis
UHGV-1378507_5	UniRef90	UniRef90_A0A416G2S5	CHAP domain-containing protein	NA
UHGV-1378507_5	eggNOG-mapper	1298920.KI911353_gene4832	Peptidoglycan-binding domain 1 protein	NA
UHGV-1378507_5	Pfam	PF05257	CHAP domain	CHAP
UHGV-1378507_5	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1378507_5	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-1378507_5	Structural annotation	PF00877, PF19127, TIGR02594, TIGR04035, COG3738	NA	NA
UHGV-1378507_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1378507_6	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-1378507_6	COG	COG5283	Phage-related tail protein	NA
UHGV-1378507_7	KOfam	K07448	mrr; restriction system protein	NA
UHGV-1378507_7	PHROG	phrog_19856	NA	unknown function
UHGV-1378507_7	UniRef90	UniRef90_A0A2T3FZ08	Mrr_cat domain-containing protein	NA
UHGV-1378507_7	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-1378507_7	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1378507_7	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-1378507_7	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-1378507_8	PHROG	phrog_1194	NA	unknown function
UHGV-1378507_8	eggNOG-mapper	1298920.KI911353_gene4840	NA	NA
UHGV-1378507_8	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1378507_9	PHROG	phrog_13879	NA	unknown function
UHGV-1378507_9	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-1378507_9	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-1378507_10	PHROG	phrog_24267	NA	unknown function
UHGV-1378507_10	UniRef90	UniRef90_A0A174B5G0	Phage-related holin (Lysis protein)	NA
UHGV-1378507_10	eggNOG-mapper	469596.HMPREF9488_01321	tail collar domain protein	NA
UHGV-1378507_10	COG	COG4675	Phage tail collar domain	NA
UHGV-1378507_11	PHROG	phrog_18725	NA	unknown function
UHGV-1378507_11	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-1378507_12	eggNOG-mapper	1298920.KI911353_gene4837	NA	NA
UHGV-1378507_13	PHROG	phrog_2295	NA	unknown function
UHGV-1378507_13	eggNOG-mapper	742733.HMPREF9469_00967	NA	NA
UHGV-1378507_13	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-1378507_13	Structural annotation	PF21722, PF20942, TIGR04488, COG3401	NA	NA
UHGV-1378507_14	eggNOG-mapper	1163671.JAGI01000002_gene1201	NA	NA
UHGV-1378507_17	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1378507_17	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1378507_17	UniRef90	UniRef90_A0A3R6UL37	XRE family transcriptional regulator	NA
UHGV-1378507_17	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-1378507_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1378507_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1378507_17	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1378507_18	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-1378507_18	UniRef90	UniRef90_A0A373NRG3	ORF6N domain-containing protein	NA
UHGV-1378507_18	eggNOG-mapper	926561.KB900622_gene670	ORF6N domain	NA
UHGV-1378507_18	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-1378507_18	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1378507_25	PHROG	phrog_4292	NA	unknown function
UHGV-1378507_25	eggNOG-mapper	411460.RUMTOR_01375	NA	NA
UHGV-1378507_27	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1378507_27	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1378507_27	UniRef90	UniRef90_R7BHE4	Phage-related protein	NA
UHGV-1378507_27	eggNOG-mapper	1298920.KI911353_gene2731	nuclear chromosome segregation	NA
UHGV-1378507_27	Pfam	PF13476	AAA domain	AAA_23
UHGV-1378507_27	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1378507_27	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1378507_29	PHROG	phrog_9958	NA	unknown function
UHGV-1378507_29	UniRef90	UniRef90_R5KQI2	NA	NA
UHGV-1378507_29	eggNOG-mapper	658655.HMPREF0988_00874	NA	NA
UHGV-1378507_29	Pfam	PF19789	NA	DUF6273
UHGV-1378507_29	Structural annotation	PF19789	NA	NA
UHGV-1378507_30	PHROG	phrog_9958	NA	unknown function
UHGV-1378507_30	UniRef90	UniRef90_A0A3E5ENL3	NA	NA
UHGV-1378507_30	eggNOG-mapper	658655.HMPREF0988_00873	NA	NA
UHGV-1378507_30	Pfam	PF19789	NA	DUF6273
UHGV-1378507_30	Structural annotation	PF19789	NA	NA
UHGV-1378507_31	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-1378507_31	UniRef90	UniRef90_A0A173SBN1	S23 ribosomal protein	NA
UHGV-1378507_31	eggNOG-mapper	658655.HMPREF0988_00872	NA	NA
UHGV-1378507_31	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-1378507_31	Structural annotation	PF05635, NF033474, COG3308	NA	NA
UHGV-1378507_32	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1378507_32	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1378507_32	UniRef90	UniRef90_A0A4Q5C974	Reverse transcriptase domain-containing protein	NA
UHGV-1378507_32	eggNOG-mapper	658655.HMPREF0988_00871	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1378507_32	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1378507_32	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1378507_32	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1378507_32	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1378507_33	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1378507_33	UniRef90	UniRef90_UPI001904C527	recombinase RecT	NA
UHGV-1378507_33	eggNOG-mapper	537013.CLOSTMETH_01715	NA	NA
UHGV-1378507_33	Pfam	PF03837	RecT family	RecT
UHGV-1378507_33	Structural annotation	NF007351, COG3723	NA	NA
UHGV-1378507_36	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1378507_36	UniRef90	UniRef90_UPI001BC4CEB0	MBL fold metallo-hydrolase	NA
UHGV-1378507_36	eggNOG-mapper	86416.Clopa_2515	Metallo-beta-lactamase superfamily	NA
UHGV-1378507_36	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-1378507_36	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1378507_36	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1378507_37	PHROG	phrog_20891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1378507_37	UniRef90	UniRef90_UPI0013794BCD	HNH endonuclease	NA
UHGV-1378507_37	eggNOG-mapper	1052673.G1FGL3_9CAUD	HNH endonuclease	NA
UHGV-1378507_37	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1378507_37	Structural annotation	PF13392	NA	NA
UHGV-1378507_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1378507_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1378507_38	UniRef90	UniRef90_A0A417PHV0	Single-stranded DNA-binding protein	NA
UHGV-1378507_38	eggNOG-mapper	585394.RHOM_16640	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1378507_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1378507_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1378507_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1378507_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1378507_38	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1378507_39	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1378507_39	UniRef90	UniRef90_A0A0R1VMU2	Pathogenesis-related transcriptional factor and ERF protein	NA
UHGV-1378507_39	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-1378507_40	PHROG	phrog_19106	NA	unknown function
UHGV-1378507_40	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-1378507_40	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-1378507_40	Structural annotation	TIGR01453	NA	NA
UHGV-1378507_43	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1378507_43	UniRef90	UniRef90_UPI001C1E0E19	GntR family transcriptional regulator	NA
UHGV-1378507_43	eggNOG-mapper	642492.Clole_1479	DnaD domain protein	NA
UHGV-1378507_43	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1378507_43	Structural annotation	PF09681, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-1378507_44	PHROG	phrog_9804	NA	unknown function
UHGV-1378507_44	UniRef90	UniRef90_A0A3A6JKE0	Inhibitor_G39P domain-containing protein	NA
UHGV-1378507_44	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-1378507_44	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1378507_44	Structural annotation	PF11417	NA	NA
UHGV-1378507_46	Structural annotation	PF16509, NF001066	NA	NA
UHGV-1378507_47	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1378507_47	PHROG	phrog_95	integrase	integration and excision
UHGV-1378507_47	UniRef90	UniRef90_A0A1G6ELN0	Site-specific DNA recombinase	NA
UHGV-1378507_47	eggNOG-mapper	1384065.JAGS01000001_gene1134	NA	NA
UHGV-1378507_47	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1378507_47	Pfam	PF07508	Recombinase	Recombinase
UHGV-1378507_47	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1378507_47	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1378507_47	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1378507_49	PHROG	phrog_21718	NA	unknown function
UHGV-1378507_49	eggNOG-mapper	397290.C810_01326	NA	NA
UHGV-1378507_49	Structural annotation	NF033819	NA	NA
UHGV-1378507_50	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-1378507_51	PHROG	phrog_16490	NA	unknown function
UHGV-1378507_51	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-1378507_52	PHROG	phrog_20016	NA	unknown function
UHGV-1378507_52	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1378507_52	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-1378507_52	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1378507_53	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-1378507_54	PHROG	phrog_8680	NA	unknown function
UHGV-1378507_54	UniRef90	UniRef90_A0A3R6Q1T2	NA	NA
UHGV-1378507_54	eggNOG-mapper	936154.STP_1604	NA	NA
UHGV-1378507_54	Pfam	PF14386	NA	DUF4417
UHGV-1378507_54	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1378507_54	Structural annotation	PF14386	NA	NA
UHGV-1378507_57	UniRef90	UniRef90_A0A352UPX5	HTH cro/C1-type domain-containing protein	NA
UHGV-1378507_58	eggNOG-mapper	1235793.C809_00533	NA	NA
UHGV-1378507_60	UniRef90	UniRef90_UPI001BC36F8D	Helix-turn-helix transcriptional regulator	NA
UHGV-1378507_60	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1378507_60	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1378507_60	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-1378507_62	PHROG	phrog_16123	NA	unknown function
UHGV-1378507_62	eggNOG-mapper	1211817.CCAT010000049_gene2438	NA	NA