UHGV-1378679

Genome information

Genome length 22,091 bps

CDS count 28

Completeness 87.21% (medium-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-1378679
vOTU ID	vOTU-017857
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0162026
BioSample	NA
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.38
Jumbo phage	No

Genome content
Genome length	22,091 bps
GC content	52.44%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	93.44%
Average CDS length	742.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1378679_1	UniRef90	UniRef90_A0A1Y4BLL6	HTH cro/C1-type domain-containing protein	NA
UHGV-1378679_1	eggNOG-mapper	476272.RUMHYD_03617	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1378679_1	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1378679_1	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1378679_1	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1378679_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1378679_2	UniRef90	UniRef90_A0A1M5ZHU2	Repressor LexA	NA
UHGV-1378679_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1378679_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1378679_2	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-1378679_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1378679_3	PHROG	phrog_95	integrase	integration and excision
UHGV-1378679_3	UniRef90	UniRef90_A0A174SZ32	Resolvase, N terminal domain	NA
UHGV-1378679_3	eggNOG-mapper	445972.ANACOL_03320	NA	NA
UHGV-1378679_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1378679_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-1378679_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1378679_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1378679_3	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1378679_4	PHROG	phrog_1129	holin	lysis
UHGV-1378679_4	UniRef90	UniRef90_A0A3D0M3S7	Holin	NA
UHGV-1378679_4	eggNOG-mapper	318464.IO99_00690	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1378679_4	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1378679_4	Structural annotation	PF16079	NA	NA
UHGV-1378679_5	PHROG	phrog_1863	NA	unknown function
UHGV-1378679_5	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-1378679_6	PHROG	phrog_435	endolysin	lysis
UHGV-1378679_6	UniRef90	UniRef90_A0A3D0M2V0	MurNAc-LAA domain-containing protein	NA
UHGV-1378679_6	eggNOG-mapper	1105031.HMPREF1141_2950	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1378679_6	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1378679_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1378679_7	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-1378679_7	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-1378679_7	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1378679_8	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-1378679_9	PHROG	phrog_13879	NA	unknown function
UHGV-1378679_9	Structural annotation	PF14594, PF00754, NF033848, COG3500, COG5156	NA	NA
UHGV-1378679_10	eggNOG-mapper	585501.HMPREF6123_0824	NA	NA
UHGV-1378679_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1378679_11	UniRef90	UniRef90_A0A3D9GHV1	Phage-related protein	NA
UHGV-1378679_11	eggNOG-mapper	717606.PaecuDRAFT_3132	Phage-related minor tail protein	NA
UHGV-1378679_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1378679_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1378679_13	PHROG	phrog_183	tail chaperone protein	tail
UHGV-1378679_13	UniRef90	UniRef90_UPI0005AA54D3	NA	NA
UHGV-1378679_13	eggNOG-mapper	1499683.CCFF01000017_gene2925	NA	NA
UHGV-1378679_13	Pfam	PF19591	NA	DUF6096
UHGV-1378679_13	Structural annotation	PF19591, TIGR01674	NA	NA
UHGV-1378679_14	PHROG	phrog_158	major tail protein	tail
UHGV-1378679_14	UniRef90	UniRef90_A0A7C6P642	Phage tail protein	NA
UHGV-1378679_14	eggNOG-mapper	1499683.CCFF01000017_gene2926	Phage tail tube protein, TTP	NA
UHGV-1378679_14	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-1378679_14	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1378679_15	Pfam	PF11367	NA	DUF3168
UHGV-1378679_15	Structural annotation	PF09646, COG3167	NA	NA
UHGV-1378679_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1378679_16	UniRef90	UniRef90_A0A136Q8F4	Phage protein, HK97 gp10 family	NA
UHGV-1378679_16	eggNOG-mapper	1280689.AUJC01000007_gene3313	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1378679_16	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1378679_17	eggNOG-mapper	1280689.AUJC01000007_gene3314	NA	NA
UHGV-1378679_17	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1378679_18	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1378679_18	UniRef90	UniRef90_UPI000D717081	phage head-tail connector protein	NA
UHGV-1378679_18	eggNOG-mapper	1280689.AUJC01000007_gene3315	Phage gp6-like head-tail connector protein	NA
UHGV-1378679_18	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1378679_18	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1378679_19	PHROG	phrog_544	major head protein	head and packaging
UHGV-1378679_19	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-1378679_19	eggNOG-mapper	642492.Clole_0972	NA	NA
UHGV-1378679_19	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1378679_20	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1378679_20	UniRef90	UniRef90_UPI00131C4E9A	NA	NA
UHGV-1378679_20	eggNOG-mapper	996306.SSUR61_0987	NA	NA
UHGV-1378679_20	Pfam	PF14265	NA	DUF4355
UHGV-1378679_20	Structural annotation	PF14265	NA	NA
UHGV-1378679_21	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1378679_21	UniRef90	UniRef90_A0A843HRB0	Minor capsid protein	NA
UHGV-1378679_21	eggNOG-mapper	1118054.CAGW01000107_gene3673	Phage Mu protein F like protein	NA
UHGV-1378679_21	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1378679_21	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1378679_21	COG	COG2369	NA	NA
UHGV-1378679_21	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1378679_22	PHROG	phrog_64	portal protein	head and packaging
UHGV-1378679_22	UniRef90	UniRef90_A0A843HXP9	Phage portal protein	NA
UHGV-1378679_22	eggNOG-mapper	1123250.KB908417_gene647	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1378679_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1378679_22	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1378679_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1378679_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1378679_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1378679_23	UniRef90	UniRef90_A0A7V8A6P5	Phage terminase large subunit PBSX family	NA
UHGV-1378679_23	eggNOG-mapper	883081.HMPREF9698_01604	Terminase RNAseH like domain	NA
UHGV-1378679_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1378679_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1378679_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1378679_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-1378679_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1378679_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1378679_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1378679_24	UniRef90	UniRef90_A0A3E2XYK7	Terminase small subunit	NA
UHGV-1378679_24	eggNOG-mapper	1230341.MJ3_13584	Terminase, small subunit	NA
UHGV-1378679_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1378679_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1378679_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1378679_25	PHROG	phrog_11237	NA	unknown function
UHGV-1378679_25	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-1378679_27	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1378679_27	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1378679_27	UniRef90	UniRef90_A0A1M5ZKP8	DNA replication protein DnaC	NA
UHGV-1378679_27	eggNOG-mapper	521460.Athe_2486	RNA helicase	NA
UHGV-1378679_27	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-1378679_27	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1378679_27	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-1378679_27	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1378679_28	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1378679_28	UniRef90	UniRef90_A0A371AZY0	Phage_rep_org_N domain-containing protein	NA
UHGV-1378679_28	eggNOG-mapper	1291050.JAGE01000002_gene3381	Phage replisome organizer, N-terminal domain protein	NA
UHGV-1378679_28	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1378679_28	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA