UHGV-1378996

Genome information

Genome length 23,279 bps

CDS count 32

Completeness 60.80% (medium-quality)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-1378996
vOTU ID	vOTU-033962
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0170592
BioSample	SAMN02334086
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.7
Jumbo phage	No

Genome content
Genome length	23,279 bps
GC content	42.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	92.91%
Average CDS length	679.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1378996_1	PHROG	phrog_24159	tail fiber protein	tail
UHGV-1378996_1	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-1378996_2	PHROG	phrog_6616	tail protein	tail
UHGV-1378996_2	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-1378996_2	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-1378996_3	PHROG	phrog_1194	NA	unknown function
UHGV-1378996_3	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-1378996_3	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1378996_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1378996_4	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-1378996_4	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-1378996_4	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1378996_4	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1378996_5	PHROG	phrog_8355	NA	unknown function
UHGV-1378996_5	UniRef90	UniRef90_UPI001F1300CC	bacteriophage Gp15 family protein	NA
UHGV-1378996_5	eggNOG-mapper	1280692.AUJL01000027_gene2152	NA	NA
UHGV-1378996_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1378996_5	Structural annotation	PF06854	NA	NA
UHGV-1378996_6	PHROG	phrog_8300	NA	unknown function
UHGV-1378996_6	eggNOG-mapper	33035.JPJF01000093_gene2245	NA	NA
UHGV-1378996_6	Structural annotation	PF06854	NA	NA
UHGV-1378996_7	PHROG	phrog_820	major tail protein	tail
UHGV-1378996_7	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-1378996_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1378996_8	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1378996_8	UniRef90	UniRef90_UPI00164BAA81	minor capsid protein	NA
UHGV-1378996_8	eggNOG-mapper	1282664.H354_06686	NA	NA
UHGV-1378996_8	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1378996_8	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1378996_9	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1378996_9	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-1378996_10	PHROG	phrog_8710	NA	unknown function
UHGV-1378996_10	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-1378996_10	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1378996_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1378996_11	eggNOG-mapper	33035.JPJF01000093_gene2250	NA	NA
UHGV-1378996_12	PHROG	phrog_1378	NA	unknown function
UHGV-1378996_12	eggNOG-mapper	1280692.AUJL01000027_gene2159	NA	NA
UHGV-1378996_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-1378996_13	UniRef90	UniRef90_A0A3R6PT58	Capsid protein	NA
UHGV-1378996_13	eggNOG-mapper	33035.JPJF01000093_gene2252	NA	NA
UHGV-1378996_13	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1378996_14	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1378996_14	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-1378996_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1378996_16	UniRef90	UniRef90_UPI00164A2DDC	minor capsid protein	NA
UHGV-1378996_16	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-1378996_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1378996_16	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-1378996_16	Structural annotation	PF06152	NA	NA
UHGV-1378996_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-1378996_17	UniRef90	UniRef90_UPI001F14233C	capsid protein	NA
UHGV-1378996_17	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-1378996_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1378996_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1378996_18	PHROG	phrog_29775	NA	unknown function
UHGV-1378996_18	UniRef90	UniRef90_UPI00164A3891	terminase	NA
UHGV-1378996_18	eggNOG-mapper	394503.Ccel_3050	Phage terminase, large subunit, PBSX family	NA
UHGV-1378996_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-1378996_18	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1378996_19	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1378996_19	UniRef90	UniRef90_UPI000AC737F1	helix-turn-helix domain containing protein	NA
UHGV-1378996_19	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-1378996_19	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-1378996_19	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1378996_19	Structural annotation	PF07141	NA	NA
UHGV-1378996_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1378996_20	UniRef90	UniRef90_UPI001F14539B	NA	NA
UHGV-1378996_20	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-1378996_20	Pfam	PF07374	NA	DUF1492
UHGV-1378996_20	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-1378996_22	UniRef90	UniRef90_A0A3R6LT65	ABC transporter ATP-binding protein	NA
UHGV-1378996_23	UniRef90	UniRef90_A0A413SPC3	NA	NA
UHGV-1378996_23	Pfam	PF20037	NA	DUF6440
UHGV-1378996_23	Structural annotation	PF20037	NA	NA
UHGV-1378996_25	Structural annotation	PF09889, COG4068	NA	NA
UHGV-1378996_26	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-1378996_27	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1378996_27	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1378996_27	UniRef90	UniRef90_UPI001D09885E	site-specific DNA-methyltransferase	NA
UHGV-1378996_27	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-1378996_27	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-1378996_27	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1378996_27	COG	COG0863	DNA modification methylase	NA
UHGV-1378996_27	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1378996_28	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1378996_28	UniRef90	UniRef90_UPI001C01C809	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1378996_28	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-1378996_28	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1378996_28	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1378996_28	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-1378996_30	PHROG	phrog_20593	NA	unknown function
UHGV-1378996_31	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1378996_31	UniRef90	UniRef90_A0A3R6D179	Restriction alleviation protein, Lar family	NA
UHGV-1378996_31	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1378996_31	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1378996_31	Structural annotation	TIGR03655	NA	NA
UHGV-1378996_32	eggNOG-mapper	742740.HMPREF9474_03128	NA	NA