UHGV-1379203

Genome information

Genome length 39,390 bps

CDS count 57

Completeness 99.56% (high-quality)

geNomad score 0.9541

Prediction confidence Confident

Genome information
Genome ID	UHGV-1379203
vOTU ID	vOTU-059961
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0265356
BioSample	SAMEA1906563
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.56% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9541
Virus hallmark genes (geNomad)	19
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.24
Jumbo phage	No

Genome content
Genome length	39,390 bps
GC content	62.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	91.67%
Average CDS length	635.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1379203_1	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-1379203_1	UniRef90	UniRef90_A0A8F5JBM4	Tape measure protein	NA
UHGV-1379203_1	eggNOG-mapper	1357272.AVEO02000111_gene3558	tape measure protein	NA
UHGV-1379203_1	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1379203_2	PHROG	phrog_14	minor tail protein	tail
UHGV-1379203_2	UniRef90	UniRef90_UPI0018AAA7B3	phage tail protein	NA
UHGV-1379203_2	eggNOG-mapper	1042209.HK44_007910	Phage minor tail protein	NA
UHGV-1379203_2	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-1379203_2	COG	COG4718	Phage tail protein	NA
UHGV-1379203_2	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-1379203_3	PHROG	phrog_18	minor tail protein	tail
UHGV-1379203_3	UniRef90	UniRef90_A0A8F5JBN8	Minor tail protein L	NA
UHGV-1379203_3	eggNOG-mapper	406818.XBJ1_1278	Phage minor tail protein L	NA
UHGV-1379203_3	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-1379203_3	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-1379203_3	COG	COG4672	Phage tail protein	NA
UHGV-1379203_3	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-1379203_4	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-1379203_4	PHROG	phrog_30	minor tail protein	tail
UHGV-1379203_4	UniRef90	UniRef90_A0A8F5JBT3	C40 family peptidase	NA
UHGV-1379203_4	eggNOG-mapper	82996.sch_09885	Prokaryotic homologs of the JAB domain	NA
UHGV-1379203_4	Pfam	PF14464	Prokaryotic homologs of the JAB domain	Prok-JAB
UHGV-1379203_4	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1379203_4	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1379203_4	Structural annotation	PF14464, PF00877, NF041370, TIGR02219, COG1310, COG0791	NA	NA
UHGV-1379203_5	PHROG	phrog_32	tail assembly protein	tail
UHGV-1379203_5	UniRef90	UniRef90_A0A8F5JBM1	Tail assembly protein	NA
UHGV-1379203_5	eggNOG-mapper	693444.D782_2464	lambda tail assembly I	NA
UHGV-1379203_5	Pfam	PF06805	Bacteriophage lambda tail assembly protein I	Lambda_tail_I
UHGV-1379203_5	COG	COG4723	Phage-related protein, tail assembly protein I	NA
UHGV-1379203_5	Structural annotation	PF06805, NF008347, COG4723	NA	NA
UHGV-1379203_6	PHROG	phrog_2589	tail protein	tail
UHGV-1379203_6	UniRef90	UniRef90_A0A7W2Q7S1	Phage tail protein	NA
UHGV-1379203_6	eggNOG-mapper	390235.PputW619_3927	Putative phage tail protein	NA
UHGV-1379203_6	Pfam	PF09327	NA	DUF1983
UHGV-1379203_6	COG	COG3979	Chitodextrinase	NA
UHGV-1379203_7	PHROG	phrog_18216	NA	unknown function
UHGV-1379203_7	UniRef90	UniRef90_I3V1U5	NA	NA
UHGV-1379203_8	PHROG	phrog_1787	NA	unknown function
UHGV-1379203_8	UniRef90	UniRef90_I3V1U6	NA	NA
UHGV-1379203_11	PHROG	phrog_20951	NA	unknown function
UHGV-1379203_11	UniRef90	UniRef90_UPI001F50342F	plasmid replication protein repA	NA
UHGV-1379203_11	eggNOG-mapper	457398.HMPREF0326_02403	NA	NA
UHGV-1379203_12	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1379203_12	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1379203_12	UniRef90	UniRef90_A0A8F5JBH0	Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein	NA
UHGV-1379203_12	eggNOG-mapper	243924.LT42_25270	involved in chromosome partitioning	NA
UHGV-1379203_12	Pfam	PF13614	AAA domain	AAA_31
UHGV-1379203_12	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1379203_12	Structural annotation	PF09140, MF_00355, NF041546, COG1192	NA	NA
UHGV-1379203_13	UniRef90	UniRef90_A0A8F5JBK6	RHH_1 domain-containing protein	NA
UHGV-1379203_13	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1379203_15	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1379203_19	eggNOG-mapper	1123487.KB892842_gene4167	NA	NA
UHGV-1379203_25	PHROG	phrog_22090	NA	unknown function
UHGV-1379203_25	UniRef90	UniRef90_A0A368APH7	Transcriptional regulator	NA
UHGV-1379203_25	eggNOG-mapper	1042209.HK44_001450	NA	NA
UHGV-1379203_26	PHROG	phrog_36962	NA	unknown function
UHGV-1379203_27	UniRef90	UniRef90_UPI0011992F80	LuxR C-terminal-related transcriptional regulator	NA
UHGV-1379203_29	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1379203_29	UniRef90	UniRef90_A0A0C1K9I2	HTH cro/C1-type domain-containing protein	NA
UHGV-1379203_29	eggNOG-mapper	1027273.GZ77_26420	Peptidase S24-like	NA
UHGV-1379203_29	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1379203_29	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1379203_29	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-1379203_29	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1379203_33	PHROG	phrog_5285	NA	unknown function
UHGV-1379203_33	eggNOG-mapper	399741.Spro_4944	NA	NA
UHGV-1379203_35	KOfam	K14059	int; integrase	NA
UHGV-1379203_35	PHROG	phrog_1	integrase	integration and excision
UHGV-1379203_35	UniRef90	UniRef90_A0A8F5JBP2	Site-specific integrase	NA
UHGV-1379203_35	eggNOG-mapper	1163398.AJJP01000173_gene957	Belongs to the 'phage' integrase family	NA
UHGV-1379203_35	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1379203_35	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1379203_35	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1379203_37	UniRef90	UniRef90_UPI001B319DB8	Lar family restriction alleviation protein	NA
UHGV-1379203_37	eggNOG-mapper	40631.O64348_BPN15	Exonuclease	NA
UHGV-1379203_37	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1379203_38	PHROG	phrog_536	transcriptional regulator	transcription regulation
UHGV-1379203_38	eggNOG-mapper	29486.NJ56_14010	NA	NA
UHGV-1379203_39	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-1379203_39	UniRef90	UniRef90_UPI0018ABA3C8	phage holin, lambda family	NA
UHGV-1379203_39	eggNOG-mapper	1388763.O165_006495	to GP 6066815, GB L04569, GB M57971, GB Z34811, GB Z34812, GB Z34821, GB Z34822, GB Z34809, GB Z34810, GB Z34813, GB Z34814, GB Z34815, GB Z34816, GB Z34817, GB Z34818, GB Z34819, GB Z34820, GB M57972, GB M91370, GB Z26294, GB Z26295, PID 291895, PID 501073, PID 508183, PID 508185, PID 508187, PID 508189, PID 508191, PID 508193, PID 508195, PID 508197, PID 508199, PID 508201, PID 509048, PID 509068, PID 509168, PID 509178, PID 509341, and PID 509344	NA
UHGV-1379203_39	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-1379203_39	NCBIFam	TIGR01594.1	phage holin, lambda family	NA
UHGV-1379203_39	Structural annotation	PF05106, TIGR01594	NA	NA
UHGV-1379203_40	PHROG	phrog_7	endolysin	lysis
UHGV-1379203_40	UniRef90	UniRef90_UPI001E586A79	glycoside hydrolase family protein	NA
UHGV-1379203_40	eggNOG-mapper	1452718.JBOY01000124_gene1273	lysozyme	NA
UHGV-1379203_40	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-1379203_40	Structural annotation	PF00959, MF_04136, COG3772	NA	NA
UHGV-1379203_42	PHROG	phrog_89	Rz-like spanin	lysis
UHGV-1379203_42	eggNOG-mapper	1437882.AZRU01000081_gene6673	NA	NA
UHGV-1379203_43	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1379203_43	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1379203_43	UniRef90	UniRef90_UPI001B343FD6	HNH endonuclease	NA
UHGV-1379203_43	eggNOG-mapper	360910.BAV1457	HNH nucleases	NA
UHGV-1379203_43	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1379203_43	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1379203_43	Structural annotation	PF01844, COG1403	NA	NA
UHGV-1379203_44	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1379203_44	UniRef90	UniRef90_A0A0C1HR26	Terminase	NA
UHGV-1379203_44	eggNOG-mapper	1492922.GY26_16085	terminase	NA
UHGV-1379203_44	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1379203_44	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1379203_44	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1379203_44	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1379203_45	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1379203_45	UniRef90	UniRef90_A0A0C1I0G5	Terminase	NA
UHGV-1379203_45	eggNOG-mapper	1492922.GY26_16080	Phage Terminase	NA
UHGV-1379203_45	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1379203_45	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1379203_45	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1379203_45	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1379203_47	PHROG	phrog_12	portal protein	head and packaging
UHGV-1379203_47	UniRef90	UniRef90_UPI0018ABC8CD	phage portal protein	NA
UHGV-1379203_47	eggNOG-mapper	443152.MDG893_20624	Phage portal protein	NA
UHGV-1379203_47	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1379203_47	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1379203_47	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1379203_47	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1379203_48	KOfam	K06904	NA	NA
UHGV-1379203_48	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1379203_48	UniRef90	UniRef90_A0A2L0LMZ5	HK97 family phage prohead protease	NA
UHGV-1379203_48	eggNOG-mapper	360910.BAV1463	Phage prohead protease, HK97 family	NA
UHGV-1379203_48	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1379203_48	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1379203_48	COG	COG3740	Phage head maturation protease	NA
UHGV-1379203_48	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1379203_49	PHROG	phrog_10	major head protein	head and packaging
UHGV-1379203_49	UniRef90	UniRef90_UPI0018AA9209	phage major capsid protein	NA
UHGV-1379203_49	eggNOG-mapper	477184.KYC_18275	Phage capsid family	NA
UHGV-1379203_49	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1379203_49	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1379203_49	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1379203_49	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1379203_50	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1379203_50	UniRef90	UniRef90_UPI001E37A08D	head-tail connector protein	NA
UHGV-1379203_50	eggNOG-mapper	1410619.SRDD_27480	Phage gp6-like head-tail connector protein	NA
UHGV-1379203_50	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1379203_50	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1379203_50	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1379203_51	PHROG	phrog_25	head closure Hc1	connector
UHGV-1379203_51	UniRef90	UniRef90_A0A8F5PPD7	Head-tail joining protein	NA
UHGV-1379203_51	eggNOG-mapper	556269.ACDQ01000003_gene1348	head-tail adaptor	NA
UHGV-1379203_51	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1379203_51	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1379203_51	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1379203_52	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1379203_52	UniRef90	UniRef90_UPI00081BFD46	HK97 gp10 family phage protein	NA
UHGV-1379203_52	eggNOG-mapper	1357272.AVEO02000111_gene3552	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1379203_52	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1379203_52	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1379203_52	Structural annotation	TIGR01725	NA	NA
UHGV-1379203_53	PHROG	phrog_347	tail terminator	connector
UHGV-1379203_53	UniRef90	UniRef90_UPI0018A9A3FA	NA	NA
UHGV-1379203_53	Pfam	PF11367	NA	DUF3168
UHGV-1379203_53	Structural annotation	PF11367	NA	NA
UHGV-1379203_54	PHROG	phrog_158	major tail protein	tail
UHGV-1379203_54	UniRef90	UniRef90_A0A077LJF7	Major tail protein	NA
UHGV-1379203_54	eggNOG-mapper	1357272.AVEO02000111_gene3554	NA	NA
UHGV-1379203_54	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-1379203_54	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-1379203_55	PHROG	phrog_344	tail assembly chaperone	tail
UHGV-1379203_56	PHROG	phrog_14766	tail protein	tail
UHGV-1379203_56	UniRef90	UniRef90_UPI0018A99496	NA	NA
UHGV-1379203_56	eggNOG-mapper	395019.Bmul_3875	NA	NA
UHGV-1379203_56	Structural annotation	PF06223, TIGR01715	NA	NA
UHGV-1379203_57	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-1379203_57	UniRef90	UniRef90_UPI000B1084FB	tape measure protein	NA
UHGV-1379203_57	eggNOG-mapper	1357272.AVEO02000111_gene3558	tape measure protein	NA
UHGV-1379203_57	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1379203_57	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1379203_57	COG	COG1196	Chromosome segregation ATPase Smc	NA