UHGV-1379792

Genome information

vOTU vOTU-022080

Genome length 36,204 bps

CDS count 65

Completeness 86.89% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-1379792
vOTU ID	vOTU-022080
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0246706
BioSample	SAMEA3541482
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.23
Jumbo phage	No

Genome content
Genome length	36,204 bps
GC content	56.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	92.85%
Average CDS length	520.52 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1379792_2	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1379792_2	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1379792_2	UniRef90	UniRef90_A0A0S2W5Q3	NA	NA
UHGV-1379792_2	eggNOG-mapper	397290.C810_04356	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-1379792_2	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1379792_2	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1379792_2	Structural annotation	PF15919, COG1598	NA	NA
UHGV-1379792_3	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-1379792_3	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1379792_3	UniRef90	UniRef90_A0A1I3T1Z8	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-1379792_3	eggNOG-mapper	243275.TDE_1838	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1379792_3	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1379792_3	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-1379792_3	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1379792_4	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1379792_4	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-1379792_5	PHROG	phrog_544	major head protein	head and packaging
UHGV-1379792_5	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-1379792_5	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1379792_5	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1379792_6	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-1379792_8	PHROG	phrog_17977	NA	unknown function
UHGV-1379792_8	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-1379792_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1379792_8	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1379792_9	PHROG	phrog_17405	head protein	head and packaging
UHGV-1379792_9	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-1379792_9	Structural annotation	PF11367	NA	NA
UHGV-1379792_10	PHROG	phrog_885	major tail protein	tail
UHGV-1379792_10	UniRef90	UniRef90_UPI000BE41A82	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-1379792_10	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-1379792_10	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1379792_11	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-1379792_13	PHROG	phrog_17658	NA	unknown function
UHGV-1379792_13	UniRef90	UniRef90_UPI0014004675	SHOCT domain-containing protein	NA
UHGV-1379792_13	eggNOG-mapper	1280692.AUJL01000004_gene836	NA	NA
UHGV-1379792_13	Structural annotation	PF18116	NA	NA
UHGV-1379792_14	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-1379792_14	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-1379792_14	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-1379792_14	Structural annotation	PF20155, COG3941	NA	NA
UHGV-1379792_15	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1379792_16	PHROG	phrog_13879	NA	unknown function
UHGV-1379792_16	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-1379792_16	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-1379792_17	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-1379792_17	Structural annotation	PF00354	NA	NA
UHGV-1379792_18	eggNOG-mapper	552398.HMPREF0866_02181	NA	NA
UHGV-1379792_20	UniRef90	UniRef90_A0A8J6JAX9	XkdX family protein	NA
UHGV-1379792_20	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1379792_21	PHROG	phrog_37604	NA	unknown function
UHGV-1379792_21	eggNOG-mapper	1232443.BAIA02000078_gene10	NA	NA
UHGV-1379792_22	PHROG	phrog_1129	holin	lysis
UHGV-1379792_22	UniRef90	UniRef90_UPI001D084907	phage holin family protein	NA
UHGV-1379792_22	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1379792_22	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1379792_22	Structural annotation	PF06946	NA	NA
UHGV-1379792_24	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1379792_24	PHROG	phrog_435	endolysin	lysis
UHGV-1379792_24	UniRef90	UniRef90_UPI001C107E48	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1379792_24	eggNOG-mapper	1410668.JNKC01000001_gene1675	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1379792_24	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1379792_24	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-1379792_24	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1379792_24	Structural annotation	PF01520, PF09992, PF01471, MF_00562, TIGR02883, COG0860, COG4632, COG3409	NA	NA
UHGV-1379792_25	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-1379792_25	Structural annotation	PF16509, MF_00674, NF008895, COG2739	NA	NA
UHGV-1379792_27	PHROG	phrog_3754	NA	unknown function
UHGV-1379792_27	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-1379792_28	PHROG	phrog_21718	NA	unknown function
UHGV-1379792_28	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-1379792_29	PHROG	phrog_22984	NA	unknown function
UHGV-1379792_30	PHROG	phrog_16490	NA	unknown function
UHGV-1379792_30	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-1379792_31	PHROG	phrog_20016	NA	unknown function
UHGV-1379792_31	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-1379792_31	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-1379792_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1379792_32	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-1379792_33	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-1379792_34	KOfam	K14059	int; integrase	NA
UHGV-1379792_34	PHROG	phrog_1	integrase	integration and excision
UHGV-1379792_34	UniRef90	UniRef90_UPI0018A8CCD8	site-specific integrase	NA
UHGV-1379792_34	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1379792_34	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1379792_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1379792_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1379792_34	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1379792_35	UniRef90	UniRef90_A0A3D1I232	zinc_ribbon_2 domain-containing protein	NA
UHGV-1379792_35	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-1379792_36	PHROG	phrog_87	metallo-protease	other
UHGV-1379792_36	UniRef90	UniRef90_A0A174DB16	Metallopeptidase immA	NA
UHGV-1379792_36	eggNOG-mapper	1294142.CINTURNW_0291	IrrE N-terminal-like domain	NA
UHGV-1379792_36	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1379792_36	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1379792_36	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1379792_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1379792_37	UniRef90	UniRef90_A0A416DHG0	XRE family transcriptional regulator	NA
UHGV-1379792_37	eggNOG-mapper	742740.HMPREF9474_03481	Helix-turn-helix XRE-family like proteins	NA
UHGV-1379792_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1379792_37	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1379792_37	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1379792_38	UniRef90	UniRef90_A0A1C7FQD9	Transcriptional regulator	NA
UHGV-1379792_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1379792_40	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-1379792_42	Structural annotation	PF13560	NA	NA
UHGV-1379792_45	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1379792_45	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1379792_45	UniRef90	UniRef90_UPI001959E3D8	AAA family ATPase	NA
UHGV-1379792_45	eggNOG-mapper	1203606.HMPREF1526_00309	nuclear chromosome segregation	NA
UHGV-1379792_45	Pfam	PF13476	AAA domain	AAA_23
UHGV-1379792_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1379792_45	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1379792_46	PHROG	phrog_862	NA	unknown function
UHGV-1379792_46	UniRef90	UniRef90_A0A2P9FIG4	NA	NA
UHGV-1379792_46	eggNOG-mapper	1203606.HMPREF1526_00310	NA	NA
UHGV-1379792_46	Structural annotation	PF05037, COG2965	NA	NA
UHGV-1379792_47	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1379792_47	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1379792_47	UniRef90	UniRef90_UPI00195A5026	MBL fold metallo-hydrolase	NA
UHGV-1379792_47	eggNOG-mapper	1203606.HMPREF1526_00311	Metallo-beta-lactamase superfamily	NA
UHGV-1379792_47	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1379792_47	dbAPIS	APIS058	NA	NA
UHGV-1379792_47	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1379792_47	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1379792_48	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1379792_48	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-1379792_48	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-1379792_49	PHROG	phrog_1029	NA	unknown function
UHGV-1379792_49	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-1379792_49	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1379792_50	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1379792_50	UniRef90	UniRef90_A0A1C6D5S6	NA	NA
UHGV-1379792_50	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-1379792_50	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1379792_50	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1379792_51	Structural annotation	PF11417	NA	NA
UHGV-1379792_53	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1379792_53	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1379792_53	UniRef90	UniRef90_H1CIV2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1379792_53	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1379792_53	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-1379792_53	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1379792_53	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1379792_53	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1379792_54	eggNOG-mapper	552398.HMPREF0866_03131	NA	NA
UHGV-1379792_55	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1379792_55	UniRef90	UniRef90_UPI0018774E0E	reductase	NA
UHGV-1379792_55	eggNOG-mapper	1235835.C814_01169	NA	NA
UHGV-1379792_55	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1379792_55	Structural annotation	PF01507, NF006327	NA	NA
UHGV-1379792_56	PHROG	phrog_38832	NA	unknown function
UHGV-1379792_56	eggNOG-mapper	445972.ANACOL_00165	NA	NA
UHGV-1379792_56	Structural annotation	PF07073	NA	NA
UHGV-1379792_57	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-1379792_57	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-1379792_57	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-1379792_62	Structural annotation	PF19070	NA	NA
UHGV-1379792_64	Structural annotation	NF041677	NA	NA