UHGV-1379849

Genome information

Genome length 23,280 bps

CDS count 31

Completeness 53.62% (medium-quality)

geNomad score 0.9681

Prediction confidence Confident

Genome information
Genome ID	UHGV-1379849
vOTU ID	vOTU-033977
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0170593
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9681
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	6.26
Jumbo phage	No

Genome content
Genome length	23,280 bps
GC content	41.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	86.80%
Average CDS length	654.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1379849_1	PHROG	phrog_15286	NA	unknown function
UHGV-1379849_1	UniRef90	UniRef90_A0A847PAX2	Bro-N domain-containing protein (Fragment)	NA
UHGV-1379849_1	eggNOG-mapper	665956.HMPREF1032_03816	BRO family, N-terminal domain	NA
UHGV-1379849_1	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1379849_1	COG	COG3617	Prophage antirepressor	NA
UHGV-1379849_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1379849_2	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-1379849_2	UniRef90	UniRef90_U2Q2K9	DNA-binding helix-turn-helix protein	NA
UHGV-1379849_2	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-1379849_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1379849_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1379849_2	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1379849_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1379849_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1379849_3	UniRef90	UniRef90_A0A1C5X479	LexA repressor	NA
UHGV-1379849_3	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1379849_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1379849_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1379849_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1379849_3	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-1379849_4	UniRef90	UniRef90_A0A3D0HKR0	Cell filamentation protein Fic	NA
UHGV-1379849_4	eggNOG-mapper	479436.Vpar_0381	NA	NA
UHGV-1379849_4	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-1379849_4	COG	COG3943	NA	NA
UHGV-1379849_4	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-1379849_5	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-1379849_5	PHROG	phrog_8036	NA	unknown function
UHGV-1379849_5	UniRef90	UniRef90_A0A416EXR8	DNA damage-inducible protein D	NA
UHGV-1379849_5	eggNOG-mapper	665950.HMPREF1025_02565	NA	NA
UHGV-1379849_5	AcrCatalog	cluster_17589	NA	NA
UHGV-1379849_5	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-1379849_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1379849_5	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-1379849_5	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1379849_5	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-1379849_6	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1379849_6	PHROG	phrog_95	integrase	integration and excision
UHGV-1379849_6	UniRef90	UniRef90_UPI000495C2B3	recombinase family protein	NA
UHGV-1379849_6	eggNOG-mapper	1120746.CCNL01000014_gene2079	Recombinase	NA
UHGV-1379849_6	Pfam	PF07508	Recombinase	Recombinase
UHGV-1379849_6	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1379849_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1379849_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1379849_8	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1379849_8	UniRef90	UniRef90_A0A161W0M7	Antitoxin HipB	NA
UHGV-1379849_8	eggNOG-mapper	929562.Emtol_4259	SMART helix-turn-helix domain protein	NA
UHGV-1379849_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1379849_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1379849_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1379849_8	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1379849_9	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1379849_9	PHROG	phrog_20388	endolysin	lysis
UHGV-1379849_9	UniRef90	UniRef90_U2S079	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1379849_9	eggNOG-mapper	1226322.HMPREF1545_04024	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1379849_9	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1379849_9	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1379849_9	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1379849_9	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1379849_10	PHROG	phrog_199	holin	lysis
UHGV-1379849_10	UniRef90	UniRef90_UPI001EE92C08	phage holin family protein	NA
UHGV-1379849_10	eggNOG-mapper	1235793.C809_01935	Bacteriophage holin family	NA
UHGV-1379849_10	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1379849_10	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1379849_10	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1379849_10	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1379849_11	PHROG	phrog_5811	NA	unknown function
UHGV-1379849_11	UniRef90	UniRef90_A0A1C5PPA1	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-1379849_11	eggNOG-mapper	1235793.C809_04315	Glycine rich protein	NA
UHGV-1379849_11	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-1379849_11	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-1379849_13	PHROG	phrog_18725	NA	unknown function
UHGV-1379849_13	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-1379849_14	Structural annotation	PF15911	NA	NA
UHGV-1379849_15	PHROG	phrog_13879	NA	unknown function
UHGV-1379849_15	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-1379849_15	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-1379849_16	PHROG	phrog_1194	NA	unknown function
UHGV-1379849_16	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-1379849_16	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1379849_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1379849_17	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-1379849_17	eggNOG-mapper	1235790.C805_00087	tape measure	NA
UHGV-1379849_17	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1379849_17	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1379849_18	PHROG	phrog_706	NA	unknown function
UHGV-1379849_18	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-1379849_18	eggNOG-mapper	742723.HMPREF9477_00898	Bacteriophage Gp15 protein	NA
UHGV-1379849_18	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1379849_18	Structural annotation	PF06854	NA	NA
UHGV-1379849_19	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-1379849_19	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-1379849_19	Structural annotation	PF10666	NA	NA
UHGV-1379849_20	PHROG	phrog_3099	NA	unknown function
UHGV-1379849_20	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-1379849_20	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1379849_21	PHROG	phrog_3266	tail completion	connector
UHGV-1379849_21	eggNOG-mapper	1120746.CCNL01000014_gene2101	NA	NA
UHGV-1379849_21	Structural annotation	PF12691	NA	NA
UHGV-1379849_22	PHROG	phrog_3366	NA	unknown function
UHGV-1379849_22	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-1379849_22	Pfam	PF20536	NA	DUF6751
UHGV-1379849_22	Structural annotation	PF20536, COG5614	NA	NA
UHGV-1379849_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1379849_23	eggNOG-mapper	33035.JPJF01000106_gene3131	NA	NA
UHGV-1379849_24	PHROG	phrog_247	major head protein	head and packaging
UHGV-1379849_24	UniRef90	UniRef90_A0A3B9CD38	Phage coat protein	NA
UHGV-1379849_24	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-1379849_24	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-1379849_24	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-1379849_25	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-1379849_27	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1379849_27	UniRef90	UniRef90_A0A3D5LSU5	Phage regulatory protein	NA
UHGV-1379849_27	eggNOG-mapper	1499683.CCFF01000014_gene3944	ORF6C domain	NA
UHGV-1379849_27	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-1379849_27	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1379849_27	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-1379849_27	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1379849_27	Structural annotation	PF10552, PF10543, TIGR02681, COG3943	NA	NA
UHGV-1379849_28	Structural annotation	PF07878, NF010256, COG4691	NA	NA
UHGV-1379849_29	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1379849_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1379849_29	UniRef90	UniRef90_A0A413YTG4	XRE family transcriptional regulator	NA
UHGV-1379849_29	eggNOG-mapper	857293.CAAU_0976	Helix-turn-helix XRE-family like proteins	NA
UHGV-1379849_29	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1379849_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1379849_29	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1379849_29	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-1379849_31	UniRef90	UniRef90_UPI00157498A0	SAVED domain-containing protein	NA
UHGV-1379849_31	eggNOG-mapper	665950.HMPREF1025_02617	NA	NA
UHGV-1379849_31	PADLOC	HamA1_00001	NA	Hachiman
UHGV-1379849_31	Pfam	PF08878	HamA	HamA