UHGV-1380499

Genome information

Genome length 23,548 bps

CDS count 44

Completeness 55.85% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-1380499
vOTU ID	vOTU-033988
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0172502
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.85% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.94
Jumbo phage	No

Genome content
Genome length	23,548 bps
GC content	53.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	87.47%
Average CDS length	472.43 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1380499_3	PHROG	phrog_544	major head protein	head and packaging
UHGV-1380499_3	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-1380499_3	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-1380499_3	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1380499_4	Structural annotation	PF06810	NA	NA
UHGV-1380499_6	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1380499_6	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-1380499_6	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1380499_6	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1380499_6	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1380499_8	PHROG	phrog_8680	NA	unknown function
UHGV-1380499_8	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-1380499_8	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1380499_8	Pfam	PF14386	NA	DUF4417
UHGV-1380499_8	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1380499_8	Structural annotation	PF14386	NA	NA
UHGV-1380499_9	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-1380499_9	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-1380499_9	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-1380499_9	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1380499_9	COG	COG2369	NA	NA
UHGV-1380499_9	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1380499_11	PHROG	phrog_64	portal protein	head and packaging
UHGV-1380499_11	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-1380499_11	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-1380499_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1380499_11	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1380499_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1380499_12	PHROG	phrog_10250	NA	unknown function
UHGV-1380499_12	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-1380499_12	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-1380499_12	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1380499_12	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1380499_12	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1380499_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-1380499_12	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1380499_13	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-1380499_13	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-1380499_13	Structural annotation	PF04218	NA	NA
UHGV-1380499_14	Structural annotation	PF07374	NA	NA
UHGV-1380499_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1380499_16	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1380499_16	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1380499_16	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-1380499_16	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1380499_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1380499_16	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1380499_20	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1380499_20	UniRef90	UniRef90_UPI001C02E649	DnaD domain protein	NA
UHGV-1380499_20	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-1380499_20	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1380499_20	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1380499_20	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-1380499_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1380499_20	Structural annotation	PF09681, MF_01819, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-1380499_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1380499_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1380499_21	UniRef90	UniRef90_A0A329TTF5	Single-stranded DNA-binding protein	NA
UHGV-1380499_21	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-1380499_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1380499_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1380499_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1380499_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1380499_21	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1380499_22	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1380499_22	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-1380499_22	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-1380499_22	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1380499_25	Structural annotation	PF09537	NA	NA
UHGV-1380499_26	Structural annotation	PF12270, NF040944	NA	NA
UHGV-1380499_27	Structural annotation	PF10743, NF033787	NA	NA
UHGV-1380499_29	PHROG	phrog_27197	NA	unknown function
UHGV-1380499_29	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-1380499_29	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1380499_30	PHROG	phrog_4433	NA	unknown function
UHGV-1380499_30	eggNOG-mapper	305700.B447_10693	Flagellar Assembly Protein A	NA
UHGV-1380499_30	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1380499_31	PHROG	phrog_15946	NA	unknown function
UHGV-1380499_31	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-1380499_32	PHROG	phrog_4652	NA	unknown function
UHGV-1380499_32	eggNOG-mapper	397290.C810_01459	NA	NA
UHGV-1380499_32	Structural annotation	TIGR02582, COG1604	NA	NA
UHGV-1380499_34	PHROG	phrog_32852	NA	unknown function
UHGV-1380499_35	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-1380499_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1380499_37	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1380499_37	UniRef90	UniRef90_A0A844DFR0	Helix-turn-helix domain-containing protein	NA
UHGV-1380499_37	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-1380499_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1380499_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1380499_37	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1380499_40	PHROG	phrog_888	NA	unknown function
UHGV-1380499_40	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-1380499_40	eggNOG-mapper	1415774.U728_165	Short C-terminal domain	NA
UHGV-1380499_40	Pfam	PF14471	NA	DUF4428
UHGV-1380499_40	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-1380499_40	Structural annotation	PF15947, PF14471	NA	NA
UHGV-1380499_43	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-1380499_43	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-1380499_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1380499_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1380499_43	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-1380499_44	KOfam	K14059	int; integrase	NA
UHGV-1380499_44	PHROG	phrog_1	integrase	integration and excision
UHGV-1380499_44	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-1380499_44	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-1380499_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1380499_44	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-1380499_44	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA