UHGV-1380798

Genome information

Genome length 23,538 bps

CDS count 34

Completeness 54.91% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-1380798
vOTU ID	vOTU-023307
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0172420
BioSample	NA
Country	Finland
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.1
Jumbo phage	No

Genome content
Genome length	23,538 bps
GC content	32.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	93.27%
Average CDS length	648.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1380798_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1380798_1	PHROG	phrog_1493	endolysin	lysis
UHGV-1380798_1	UniRef90	UniRef90_A0A7C6K634	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1380798_1	eggNOG-mapper	1121335.Clst_0412	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1380798_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1380798_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1380798_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1380798_1	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-1380798_2	eggNOG-mapper	1347392.CCEZ01000017_gene1158	NA	NA
UHGV-1380798_3	PHROG	phrog_2429	involved in bacteriocin production or immunity	moron, auxiliary metabolic gene and host takeover
UHGV-1380798_3	UniRef90	UniRef90_A0A1G5JWQ1	BhlA holin family protein	NA
UHGV-1380798_3	eggNOG-mapper	1128398.Curi_c21990	BhlA holin family	NA
UHGV-1380798_3	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-1380798_4	PHROG	phrog_18444	NA	unknown function
UHGV-1380798_4	eggNOG-mapper	1294142.CINTURNW_1043	NA	NA
UHGV-1380798_5	PHROG	phrog_36443	NA	unknown function
UHGV-1380798_5	UniRef90	UniRef90_UPI00164ECC46	phage tail protein	NA
UHGV-1380798_5	eggNOG-mapper	1347392.CCEZ01000045_gene1	Phage minor structural protein	NA
UHGV-1380798_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1380798_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1380798_5	COG	COG4926	Phage-related protein	NA
UHGV-1380798_5	Structural annotation	PF06605, PF20086, PF18099, TIGR01665, NF033675, COG4926	NA	NA
UHGV-1380798_6	PHROG	phrog_1401	NA	unknown function
UHGV-1380798_6	UniRef90	UniRef90_UPI0007099B7A	NA	NA
UHGV-1380798_6	eggNOG-mapper	1347392.CCEZ01000045_gene2	NA	NA
UHGV-1380798_6	Structural annotation	PF07761	NA	NA
UHGV-1380798_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1380798_9	UniRef90	UniRef90_UPI001C0EB196	phage tail family protein	NA
UHGV-1380798_9	eggNOG-mapper	1347392.CCEZ01000045_gene7	phage tail	NA
UHGV-1380798_9	Pfam	PF20753	Phage tail C-terminal domain	DUF6558_C
UHGV-1380798_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-1380798_9	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-1380798_10	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1380798_10	UniRef90	UniRef90_A0A845QYL5	Phage tail tape measure protein	NA
UHGV-1380798_10	eggNOG-mapper	883114.HMPREF9709_01184	Phage-related minor tail protein	NA
UHGV-1380798_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1380798_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1380798_10	COG	COG5283	Phage-related tail protein	NA
UHGV-1380798_10	Structural annotation	PF10145, TIGR01760, COG3941	NA	NA
UHGV-1380798_11	PHROG	phrog_5610	NA	unknown function
UHGV-1380798_11	UniRef90	UniRef90_UPI000985AE5A	NA	NA
UHGV-1380798_11	eggNOG-mapper	1227360.C176_12323	NA	NA
UHGV-1380798_11	Pfam	PF16729	NA	DUF5067
UHGV-1380798_11	COG	COG3170	Type IV pilus assembly protein FimV	NA
UHGV-1380798_11	Structural annotation	PF16729, MF_00791, NF003967, COG2967	NA	NA
UHGV-1380798_12	PHROG	phrog_706	NA	unknown function
UHGV-1380798_12	UniRef90	UniRef90_A0A174K3F3	Bacteriophage Gp15 protein	NA
UHGV-1380798_12	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-1380798_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1380798_12	Structural annotation	PF06854	NA	NA
UHGV-1380798_13	PHROG	phrog_4450	NA	unknown function
UHGV-1380798_13	Pfam	PF20378	NA	DUF6673
UHGV-1380798_13	Structural annotation	PF10666	NA	NA
UHGV-1380798_14	UniRef90	UniRef90_A0A239MK55	Head fiber protein	NA
UHGV-1380798_14	eggNOG-mapper	1450694.BTS2_0535	NA	NA
UHGV-1380798_14	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-1380798_15	PHROG	phrog_3099	NA	unknown function
UHGV-1380798_15	eggNOG-mapper	428127.EUBDOL_01218	NA	NA
UHGV-1380798_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1380798_16	PHROG	phrog_3266	tail completion	connector
UHGV-1380798_16	UniRef90	UniRef90_UPI0013D1249C	chloramphenicol resistance protein	NA
UHGV-1380798_16	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-1380798_16	Structural annotation	PF12691	NA	NA
UHGV-1380798_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1380798_17	UniRef90	UniRef90_A0A845R6E5	Capsid protein	NA
UHGV-1380798_17	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-1380798_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1380798_17	Structural annotation	PF11114	NA	NA
UHGV-1380798_18	PHROG	phrog_3366	NA	unknown function
UHGV-1380798_18	eggNOG-mapper	645991.Sgly_0343	NA	NA
UHGV-1380798_18	Pfam	PF20536	NA	DUF6751
UHGV-1380798_18	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-1380798_19	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1380798_19	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-1380798_19	eggNOG-mapper	536233.CLO_0887	NA	NA
UHGV-1380798_20	PHROG	phrog_2724	NA	unknown function
UHGV-1380798_20	UniRef90	UniRef90_UPI000BA52A26	Rho termination factor N-terminal domain-containing protein	NA
UHGV-1380798_20	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-1380798_20	COG	COG0261	Ribosomal protein L21	NA
UHGV-1380798_20	Structural annotation	PF07498	NA	NA
UHGV-1380798_21	PHROG	phrog_544	major head protein	head and packaging
UHGV-1380798_21	UniRef90	UniRef90_A0A1S9I8V0	N4-gp56 family major capsid protein	NA
UHGV-1380798_21	eggNOG-mapper	173707.Q79S85_9CAUD	peptidase activity	NA
UHGV-1380798_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1380798_21	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1380798_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1380798_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1380798_22	UniRef90	UniRef90_B0MB52	Phage minor structural protein GP20	NA
UHGV-1380798_22	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-1380798_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1380798_22	Structural annotation	PF06810	NA	NA
UHGV-1380798_23	PHROG	phrog_419	NA	unknown function
UHGV-1380798_23	UniRef90	UniRef90_F6K8Q9	Phage-related protein	NA
UHGV-1380798_23	eggNOG-mapper	1499683.CCFF01000005_gene67	NA	NA
UHGV-1380798_23	Structural annotation	PF14083	NA	NA
UHGV-1380798_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1380798_25	UniRef90	UniRef90_A0A845R0G7	Minor capsid protein	NA
UHGV-1380798_25	eggNOG-mapper	525255.HMPREF0077_0390	Phage minor capsid protein 2	NA
UHGV-1380798_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1380798_25	COG	COG2369	NA	NA
UHGV-1380798_25	Structural annotation	PF06152	NA	NA
UHGV-1380798_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-1380798_27	UniRef90	UniRef90_A0A845R3Q9	Phage capsid protein	NA
UHGV-1380798_27	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-1380798_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1380798_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1380798_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1380798_28	UniRef90	UniRef90_A0A845R6F6	PBSX family phage terminase large subunit	NA
UHGV-1380798_28	eggNOG-mapper	1032362.F6K8Q6_9CAUD	DNA packaging	NA
UHGV-1380798_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1380798_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1380798_28	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1380798_29	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-1380798_29	UniRef90	UniRef90_A0A6N3EQE1	ATPase subunit of terminase (GpP-like)	NA
UHGV-1380798_29	eggNOG-mapper	358681.BBR47_35440	NA	NA
UHGV-1380798_29	COG	COG5484	NA	NA
UHGV-1380798_34	PHROG	phrog_10157	NA	unknown function
UHGV-1380798_34	UniRef90	UniRef90_A0A6N7XZE8	Sigma70_r4_2 domain-containing protein	NA
UHGV-1380798_34	eggNOG-mapper	1444306.JFZC01000034_gene2642	NA	NA