UHGV-1380938

Genome information

vOTU vOTU-020302

Genome length 23,369 bps

CDS count 33

Completeness 66.69% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-1380938
vOTU ID	vOTU-020302
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0171213
BioSample	SAMEA2338828
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.61
Jumbo phage	No

Genome content
Genome length	23,369 bps
GC content	41.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	94.66%
Average CDS length	676.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1380938_1	PHROG	phrog_15198	NA	unknown function
UHGV-1380938_1	UniRef90	UniRef90_UPI0015708581	NA	NA
UHGV-1380938_1	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-1380938_1	Pfam	PF04448	NA	DUF551
UHGV-1380938_2	PHROG	phrog_10714	NA	unknown function
UHGV-1380938_3	PHROG	phrog_20593	NA	unknown function
UHGV-1380938_3	Structural annotation	PF07870, TIGR02501	NA	NA
UHGV-1380938_5	PHROG	phrog_8684	NA	unknown function
UHGV-1380938_5	UniRef90	UniRef90_UPI00156FED61	YopX family protein	NA
UHGV-1380938_5	eggNOG-mapper	476272.RUMHYD_03337	NA	NA
UHGV-1380938_5	Pfam	PF09643	YopX protein	YopX
UHGV-1380938_5	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1380938_6	PHROG	phrog_15198	NA	unknown function
UHGV-1380938_6	UniRef90	UniRef90_A0A174HIL1	NA	NA
UHGV-1380938_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1380938_7	UniRef90	UniRef90_A0A1C6IW44	RNA polymerase sigma-70 factor, Planctomycetaceae-specific subfamily 1	NA
UHGV-1380938_7	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-1380938_7	Pfam	PF07374	NA	DUF1492
UHGV-1380938_7	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-1380938_9	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1380938_9	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-1380938_9	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-1380938_9	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-1380938_10	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1380938_10	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-1380938_10	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-1380938_10	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1380938_10	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1380938_10	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1380938_10	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1380938_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-1380938_11	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-1380938_11	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-1380938_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1380938_11	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1380938_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1380938_12	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1380938_12	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1380938_12	UniRef90	UniRef90_UPI00156EEE56	Clp protease ClpP	NA
UHGV-1380938_12	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1380938_12	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1380938_12	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1380938_12	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-1380938_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-1380938_13	UniRef90	UniRef90_UPI00156F222D	phage major capsid protein	NA
UHGV-1380938_13	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-1380938_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1380938_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1380938_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1380938_13	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-1380938_15	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-1380938_15	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1380938_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1380938_16	Structural annotation	PF05657	NA	NA
UHGV-1380938_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1380938_17	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-1380938_17	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1380938_17	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1380938_18	PHROG	phrog_88	major tail protein	tail
UHGV-1380938_18	UniRef90	UniRef90_D4M596	Phage major tail protein, phi13 family	NA
UHGV-1380938_18	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-1380938_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1380938_18	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1380938_21	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1380938_21	UniRef90	UniRef90_A0A373N7M8	PhageMin_Tail domain-containing protein	NA
UHGV-1380938_21	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-1380938_21	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1380938_21	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1380938_21	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1380938_22	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1380938_22	UniRef90	UniRef90_UPI001570C170	phage tail protein	NA
UHGV-1380938_22	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-1380938_22	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1380938_22	COG	COG4722	Phage-related protein YomH	NA
UHGV-1380938_22	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1380938_23	PHROG	phrog_13289	tail protein	tail
UHGV-1380938_23	UniRef90	UniRef90_UPI001570BE36	phage tail protein	NA
UHGV-1380938_23	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-1380938_23	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1380938_23	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1380938_23	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-1380938_23	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1380938_24	PHROG	phrog_14030	NA	unknown function
UHGV-1380938_24	UniRef90	UniRef90_UPI0018999D57	phage tail tip lysozyme	NA
UHGV-1380938_24	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-1380938_24	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1380938_24	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1380938_24	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1380938_24	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-1380938_25	COG	COG4675	Phage tail collar domain	NA
UHGV-1380938_26	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-1380938_28	Structural annotation	PF00041	NA	NA
UHGV-1380938_30	PHROG	phrog_17147	NA	unknown function
UHGV-1380938_30	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-1380938_30	eggNOG-mapper	657322.FPR_27150	NA	NA
UHGV-1380938_31	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1380938_31	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1380938_31	UniRef90	UniRef90_UPI00156F87C5	RNA-directed DNA polymerase	NA
UHGV-1380938_31	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1380938_31	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1380938_31	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1380938_31	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1380938_31	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-1380938_33	PHROG	phrog_28526	NA	unknown function
UHGV-1380938_33	UniRef90	UniRef90_UPI00156FE2AD	NA	NA
UHGV-1380938_33	eggNOG-mapper	411462.DORLON_00769	NA	NA
UHGV-1380938_33	Pfam	PF04255	NA	DUF433