UHGV-1381446

Genome information

Genome length 41,194 bps

CDS count 42

Completeness 95.66% (high-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-1381446
vOTU ID	vOTU-067172
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0274821
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.66% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.82
Jumbo phage	No

Genome content
Genome length	41,194 bps
GC content	53.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	91.63%
Average CDS length	900.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1381446_1	eggNOG-mapper	1280706.AUJE01000003_gene2276	Endodeoxyribonuclease RusA	NA
UHGV-1381446_2	eggNOG-mapper	401526.TcarDRAFT_1307	NA	NA
UHGV-1381446_3	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1381446_3	UniRef90	UniRef90_D4S857	HNH endonuclease domain protein	NA
UHGV-1381446_3	eggNOG-mapper	585503.HMPREF7545_1722	HNH endonuclease	NA
UHGV-1381446_3	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1381446_3	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1381446_4	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1381446_4	UniRef90	UniRef90_A0A109WCJ8	Methyltransferase	NA
UHGV-1381446_4	eggNOG-mapper	679201.HMPREF9334_00469	methyltransferase	NA
UHGV-1381446_4	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1381446_4	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-1381446_4	Structural annotation	PF05148, MF_00735, NF033398, COG1041	NA	NA
UHGV-1381446_5	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-1381446_5	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-1381446_6	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1381446_6	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1381446_6	UniRef90	UniRef90_D4S865	Terminase small subunit	NA
UHGV-1381446_6	eggNOG-mapper	585503.HMPREF7545_1730	Terminase small subunit	NA
UHGV-1381446_6	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1381446_6	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1381446_6	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1381446_7	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1381446_7	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1381446_7	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-1381446_7	eggNOG-mapper	585503.HMPREF7545_1731	Terminase-like family	NA
UHGV-1381446_7	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1381446_7	COG	COG5323	Phage large terminase packaging protein	NA
UHGV-1381446_7	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-1381446_9	PHROG	phrog_332	head-tail adaptor	connector
UHGV-1381446_9	UniRef90	UniRef90_A0A8B2QMC7	Head-to-tail connecting protein	NA
UHGV-1381446_9	eggNOG-mapper	585503.HMPREF7545_1733	Bacteriophage head to tail connecting protein	NA
UHGV-1381446_9	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-1381446_9	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-1381446_11	PHROG	phrog_458	protease	other
UHGV-1381446_11	UniRef90	UniRef90_A0A6J5NV41	Putative protease	NA
UHGV-1381446_11	eggNOG-mapper	585503.HMPREF7545_1735	NA	NA
UHGV-1381446_12	PHROG	phrog_212	major head protein	head and packaging
UHGV-1381446_12	UniRef90	UniRef90_A0A0U1KVA9	NA	NA
UHGV-1381446_12	eggNOG-mapper	585503.HMPREF7545_1736	NA	NA
UHGV-1381446_12	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-1381446_12	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1381446_13	eggNOG-mapper	585503.HMPREF7545_1737	NA	NA
UHGV-1381446_13	Structural annotation	PF21190, NF033675	NA	NA
UHGV-1381446_15	PHROG	phrog_394	tail protein	tail
UHGV-1381446_15	UniRef90	UniRef90_A0A8B2QU77	Tail tube protein	NA
UHGV-1381446_15	eggNOG-mapper	585503.HMPREF7545_1739	NA	NA
UHGV-1381446_15	Structural annotation	PF17212	NA	NA
UHGV-1381446_16	PHROG	phrog_376	tail protein	tail
UHGV-1381446_16	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-1381446_16	eggNOG-mapper	585503.HMPREF7545_1740	NA	NA
UHGV-1381446_16	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-1381446_17	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-1381446_17	UniRef90	UniRef90_A0A3A4JVW9	NA	NA
UHGV-1381446_17	eggNOG-mapper	585503.HMPREF7545_1741	NA	NA
UHGV-1381446_17	Structural annotation	PF11039, MF_02210, NF011709, COG1247	NA	NA
UHGV-1381446_18	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-1381446_18	Structural annotation	TIGR02971	NA	NA
UHGV-1381446_19	UniRef90	UniRef90_D4S878	NlpC/P60 family protein	NA
UHGV-1381446_19	eggNOG-mapper	1123288.SOV_2c10740	NA	NA
UHGV-1381446_19	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-1381446_19	Structural annotation	PF01464, COG0741	NA	NA
UHGV-1381446_20	PHROG	phrog_9880	NA	unknown function
UHGV-1381446_20	UniRef90	UniRef90_D4S879	LPD3 domain-containing protein	NA
UHGV-1381446_20	eggNOG-mapper	585503.HMPREF7545_1744	NA	NA
UHGV-1381446_20	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-1381446_21	PHROG	phrog_1640	tail protein	tail
UHGV-1381446_21	eggNOG-mapper	585503.HMPREF7545_1745	NA	NA
UHGV-1381446_24	PHROG	phrog_199	holin	lysis
UHGV-1381446_24	UniRef90	UniRef90_UPI00040D16D2	phage holin family protein	NA
UHGV-1381446_24	eggNOG-mapper	546271.Selsp_1310	Bacteriophage holin family	NA
UHGV-1381446_24	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1381446_24	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1381446_25	eggNOG-mapper	1392502.JNIO01000008_gene1280	NA	NA
UHGV-1381446_25	Structural annotation	PF21277	NA	NA
UHGV-1381446_27	KOfam	K14059	int; integrase	NA
UHGV-1381446_27	PHROG	phrog_1	integrase	integration and excision
UHGV-1381446_27	UniRef90	UniRef90_A0A1B1I029	Integrase	NA
UHGV-1381446_27	eggNOG-mapper	679201.HMPREF9334_00449	Belongs to the 'phage' integrase family	NA
UHGV-1381446_27	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1381446_27	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1381446_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1381446_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1381446_27	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1381446_30	eggNOG-mapper	1280681.AUJZ01000011_gene2315	DNA/RNA non-specific endonuclease	NA
UHGV-1381446_30	Pfam	PF02805	Metal binding domain of Ada	Ada_Zn_binding
UHGV-1381446_30	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-1381446_31	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1381446_31	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1381446_31	UniRef90	UniRef90_S7HQG8	LexA repressor family protein	NA
UHGV-1381446_31	eggNOG-mapper	1273103.NM10_06896	Peptidase S24-like	NA
UHGV-1381446_31	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1381446_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1381446_31	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1381446_31	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1381446_31	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-1381446_32	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1381446_32	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1381446_32	UniRef90	UniRef90_A0A7X0HTD6	Anti-repressor protein	NA
UHGV-1381446_32	eggNOG-mapper	1462526.BN990_01804	BRO family, N-terminal domain	NA
UHGV-1381446_32	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1381446_32	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1381446_32	COG	COG3617	Prophage antirepressor	NA
UHGV-1381446_32	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1381446_33	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1381446_33	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1381446_36	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1381446_36	UniRef90	UniRef90_UPI000415F195	YqaJ viral recombinase family protein	NA
UHGV-1381446_36	eggNOG-mapper	864563.HMPREF9166_1277	YqaJ viral recombinase family protein	NA
UHGV-1381446_36	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1381446_36	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1381446_36	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1381446_36	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1381446_37	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1381446_37	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1381446_37	UniRef90	UniRef90_UPI000418E28B	recombinase RecT	NA
UHGV-1381446_37	eggNOG-mapper	1273103.NM10_01169	Recombinase, phage RecT family	NA
UHGV-1381446_37	Pfam	PF03837	RecT family	RecT
UHGV-1381446_37	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1381446_37	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1381446_37	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1381446_38	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-1381446_38	PHROG	phrog_923	NA	unknown function
UHGV-1381446_38	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-1381446_38	Structural annotation	PF13599, NF011744	NA	NA
UHGV-1381446_39	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1381446_39	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1381446_39	UniRef90	UniRef90_D4S859	Cytosine-specific methyltransferase	NA
UHGV-1381446_39	eggNOG-mapper	585503.HMPREF7545_1724	Cytosine-specific methyltransferase	NA
UHGV-1381446_39	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1381446_39	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1381446_39	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1381446_39	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1381446_39	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-1381446_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1381446_40	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1381446_40	UniRef90	UniRef90_A0A1M4XC05	Single-stranded DNA-binding protein	NA
UHGV-1381446_40	eggNOG-mapper	864563.HMPREF9166_1268	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1381446_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1381446_40	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1381446_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1381446_40	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1381446_40	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1381446_41	KOfam	K11144	dnaI; primosomal protein DnaI	NA
UHGV-1381446_41	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1381446_41	UniRef90	UniRef90_UPI001F004CEF	ATP-binding protein	NA
UHGV-1381446_41	eggNOG-mapper	585503.HMPREF7545_1719	IstB-like ATP binding protein	NA
UHGV-1381446_41	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1381446_41	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1381446_41	Structural annotation	PF01695, MF_01158, NF006505, COG1484	NA	NA
UHGV-1381446_42	UniRef90	UniRef90_I0GS13	Putative RusA family protein	NA
UHGV-1381446_42	eggNOG-mapper	1280706.AUJE01000003_gene2276	Endodeoxyribonuclease RusA	NA