UHGV-1381662

Genome information

Genome length 36,078 bps

CDS count 63

Completeness 97.65% (high-quality)

geNomad score 0.9737

Prediction confidence Confident

Genome information
Genome ID	UHGV-1381662
vOTU ID	vOTU-008373
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0245877
BioSample	SAMEA2466898
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.65% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9737
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.41
Jumbo phage	No

Genome content
Genome length	36,078 bps
GC content	29.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	91.56%
Average CDS length	527.91 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1381662_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1381662_1	PHROG	phrog_95	integrase	integration and excision
UHGV-1381662_1	UniRef90	UniRef90_UPI001BAD55EF	recombinase family protein	NA
UHGV-1381662_1	eggNOG-mapper	537013.CLOSTMETH_01697	Resolvase, N terminal domain	NA
UHGV-1381662_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1381662_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-1381662_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1381662_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1381662_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-1381662_2	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-1381662_2	PHROG	phrog_8036	NA	unknown function
UHGV-1381662_2	UniRef90	UniRef90_R7P4T0	DNA-damage-inducible protein	NA
UHGV-1381662_2	eggNOG-mapper	1514668.JOOA01000001_gene65	BRO family, N-terminal domain	NA
UHGV-1381662_2	AcrCatalog	cluster_17589	NA	NA
UHGV-1381662_2	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-1381662_2	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1381662_2	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-1381662_2	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1381662_2	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-1381662_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1381662_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1381662_3	UniRef90	UniRef90_A0A3D0X8J2	LexA family transcriptional regulator	NA
UHGV-1381662_3	eggNOG-mapper	1321784.HMPREF1987_01096	Peptidase S24-like	NA
UHGV-1381662_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1381662_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1381662_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1381662_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1381662_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1381662_4	UniRef90	UniRef90_A0A1Z5IZ68	XRE family transcriptional regulator	NA
UHGV-1381662_4	eggNOG-mapper	12360.Q8SDX1_BPPHA	sequence-specific DNA binding	NA
UHGV-1381662_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1381662_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1381662_9	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1381662_9	UniRef90	UniRef90_A0A3B8SUV3	DnaB_2 domain-containing protein	NA
UHGV-1381662_9	eggNOG-mapper	642492.Clole_1479	DnaD domain protein	NA
UHGV-1381662_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1381662_9	Structural annotation	PF09681, PF09524, TIGR01714, COG1846	NA	NA
UHGV-1381662_13	PHROG	phrog_6244	NA	unknown function
UHGV-1381662_13	UniRef90	UniRef90_A0A345ARL2	Endonuclease	NA
UHGV-1381662_13	eggNOG-mapper	1308866.J416_09399	YqaJ viral recombinase family	NA
UHGV-1381662_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1381662_13	Structural annotation	PF05565	NA	NA
UHGV-1381662_14	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1381662_14	UniRef90	UniRef90_A0A843HPP6	PD-(D/E)XK nuclease family protein	NA
UHGV-1381662_14	eggNOG-mapper	1399942.U3PDT7_9CAUD	nuclease activity	NA
UHGV-1381662_14	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1381662_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1381662_15	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-1381662_15	Structural annotation	PF05772	NA	NA
UHGV-1381662_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1381662_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1381662_16	UniRef90	UniRef90_A0A350H2L8	Single-stranded DNA-binding protein	NA
UHGV-1381662_16	eggNOG-mapper	1121936.AUHI01000014_gene22	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1381662_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1381662_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1381662_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1381662_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1381662_16	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1381662_30	Structural annotation	PF10654	NA	NA
UHGV-1381662_32	Structural annotation	PF15456	NA	NA
UHGV-1381662_34	Structural annotation	PF10922	NA	NA
UHGV-1381662_35	UniRef90	UniRef90_A0A353JAA0	Terminase_3 domain-containing protein (Fragment)	NA
UHGV-1381662_35	eggNOG-mapper	428125.CLOLEP_01805	NA	NA
UHGV-1381662_35	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-1381662_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1381662_36	PHROG	phrog_10250	NA	unknown function
UHGV-1381662_36	UniRef90	UniRef90_A0A3B8SL24	PBSX family phage terminase large subunit	NA
UHGV-1381662_36	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-1381662_36	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1381662_36	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1381662_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1381662_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-1381662_36	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1381662_37	PHROG	phrog_533	portal protein	head and packaging
UHGV-1381662_37	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-1381662_37	eggNOG-mapper	1032362.F6K8Q7_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1381662_37	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1381662_38	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1381662_38	UniRef90	UniRef90_R6YG84	CdiA_C domain-containing protein	NA
UHGV-1381662_38	eggNOG-mapper	1378168.N510_02341	cell adhesion	NA
UHGV-1381662_38	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1381662_38	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-1381662_38	COG	COG2369	NA	NA
UHGV-1381662_38	Structural annotation	PF06152	NA	NA
UHGV-1381662_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1381662_39	UniRef90	UniRef90_UPI0006C08B27	phage scaffolding protein	NA
UHGV-1381662_39	eggNOG-mapper	545697.HMPREF0216_02848	Phage minor structural protein GP20	NA
UHGV-1381662_39	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1381662_39	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1381662_40	PHROG	phrog_422	major head protein	head and packaging
UHGV-1381662_40	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-1381662_40	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-1381662_40	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1381662_42	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1381662_42	UniRef90	UniRef90_A0A371AQT0	NA	NA
UHGV-1381662_42	eggNOG-mapper	545697.HMPREF0216_02851	NA	NA
UHGV-1381662_43	PHROG	phrog_3366	NA	unknown function
UHGV-1381662_43	Structural annotation	PF20536	NA	NA
UHGV-1381662_44	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1381662_44	UniRef90	UniRef90_UPI00067E9657	minor capsid protein	NA
UHGV-1381662_44	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-1381662_44	Structural annotation	PF11114	NA	NA
UHGV-1381662_45	PHROG	phrog_3266	tail completion	connector
UHGV-1381662_45	UniRef90	UniRef90_UPI001C86C58C	chloramphenicol resistance protein	NA
UHGV-1381662_45	eggNOG-mapper	1292035.H476_1010	NA	NA
UHGV-1381662_45	Structural annotation	PF12691	NA	NA
UHGV-1381662_46	PHROG	phrog_3099	NA	unknown function
UHGV-1381662_46	eggNOG-mapper	1449050.JNLE01000003_gene3884	NA	NA
UHGV-1381662_46	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1381662_47	Structural annotation	PF10666	NA	NA
UHGV-1381662_48	PHROG	phrog_706	NA	unknown function
UHGV-1381662_48	UniRef90	UniRef90_UPI000B35C11D	bacteriophage Gp15 family protein	NA
UHGV-1381662_48	eggNOG-mapper	645991.Sgly_0348	Bacteriophage Gp15 protein	NA
UHGV-1381662_48	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1381662_48	Structural annotation	PF06854	NA	NA
UHGV-1381662_49	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1381662_49	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-1381662_49	eggNOG-mapper	1226322.HMPREF1545_00059	tape measure	NA
UHGV-1381662_49	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1381662_50	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-1381662_51	PHROG	phrog_6616	tail protein	tail
UHGV-1381662_52	PHROG	phrog_372	tail protein	tail
UHGV-1381662_52	eggNOG-mapper	1507.HMPREF0262_00218	tail collar domain protein	NA
UHGV-1381662_52	COG	COG4675	Phage tail collar domain	NA
UHGV-1381662_52	Structural annotation	PF05895, MF_04116, NF010681, COG3291, COG2967	NA	NA
UHGV-1381662_53	Structural annotation	PF18573, NF033147	NA	NA
UHGV-1381662_58	PHROG	phrog_13632	NA	unknown function
UHGV-1381662_58	eggNOG-mapper	508419.F8J177_9CAUD	NA	NA
UHGV-1381662_59	Structural annotation	PF06946	NA	NA
UHGV-1381662_61	UniRef90	UniRef90_A0A3B9T5N2	Peptidase C51 domain-containing protein	NA
UHGV-1381662_61	eggNOG-mapper	883109.HMPREF0380_00270	pathogenesis	NA
UHGV-1381662_61	Pfam	PF05257	CHAP domain	CHAP
UHGV-1381662_61	COG	COG2247	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	NA
UHGV-1381662_61	Structural annotation	PF02427, COG3942, COG2139	NA	NA
UHGV-1381662_63	PHROG	phrog_7566	NA	unknown function
UHGV-1381662_63	UniRef90	UniRef90_UPI000E542A38	phosphoenolpyruvate carboxykinase	NA