UHGV-1381698

Genome information

Genome length 23,515 bps

CDS count 31

Completeness 58.58% (medium-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-1381698
vOTU ID	vOTU-034008
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0172278
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.58% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.98
Jumbo phage	No

Genome content
Genome length	23,515 bps
GC content	40.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	93.69%
Average CDS length	715.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1381698_1	eggNOG-mapper	1035189.HMPREF9954_1937	Belongs to the peptidase S14 family	NA
UHGV-1381698_1	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1381698_2	PHROG	phrog_10	major head protein	head and packaging
UHGV-1381698_2	UniRef90	UniRef90_A0A6I1TX70	Phage major capsid protein	NA
UHGV-1381698_2	eggNOG-mapper	1035189.HMPREF9954_1936	Phage capsid family	NA
UHGV-1381698_2	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1381698_2	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1381698_2	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1381698_2	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1381698_3	PHROG	phrog_749	NA	unknown function
UHGV-1381698_3	UniRef90	UniRef90_UPI001CBB9ADC	phage gp6-like head-tail connector protein	NA
UHGV-1381698_3	eggNOG-mapper	888049.HMPREF8578_0263	NA	NA
UHGV-1381698_3	Structural annotation	TIGR01560	NA	NA
UHGV-1381698_4	PHROG	phrog_933	NA	unknown function
UHGV-1381698_5	UniRef90	UniRef90_A0A6I1TUW4	Phage head-tail adapter protein	NA
UHGV-1381698_5	eggNOG-mapper	888049.HMPREF8578_0262	NA	NA
UHGV-1381698_5	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1381698_6	UniRef90	UniRef90_A0A139RIK3	NA	NA
UHGV-1381698_6	eggNOG-mapper	1336234.JAGN01000004_gene522	NA	NA
UHGV-1381698_6	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1381698_7	PHROG	phrog_78	tail terminator	connector
UHGV-1381698_7	UniRef90	UniRef90_A0A139RIS6	Putative phage protein	NA
UHGV-1381698_7	eggNOG-mapper	1035189.HMPREF9954_1931	NA	NA
UHGV-1381698_7	Structural annotation	PF05657	NA	NA
UHGV-1381698_8	PHROG	phrog_88	major tail protein	tail
UHGV-1381698_8	UniRef90	UniRef90_A0A1X1IKK5	Phage tail protein	NA
UHGV-1381698_8	eggNOG-mapper	1035189.HMPREF9954_1930	Phage tail tube protein	NA
UHGV-1381698_8	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-1381698_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1381698_8	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1381698_9	PHROG	phrog_187	head-tail adaptor	connector
UHGV-1381698_9	UniRef90	UniRef90_A0A139NGQ9	Putative phage protein	NA
UHGV-1381698_10	PHROG	phrog_10068	NA	unknown function
UHGV-1381698_11	PHROG	phrog_7687	NA	unknown function
UHGV-1381698_12	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-1381698_12	UniRef90	UniRef90_A0A1X1FZU9	Phage tail tape measure protein	NA
UHGV-1381698_12	eggNOG-mapper	1054460.SPPN_00445	Phage tail tape measure protein, TP901 family	NA
UHGV-1381698_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1381698_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1381698_12	COG	COG5283	Phage-related tail protein	NA
UHGV-1381698_12	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1381698_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1381698_13	UniRef90	UniRef90_A0A139RIM3	Phage-associated protein	NA
UHGV-1381698_13	eggNOG-mapper	768726.HMPREF9178_1053	NA	NA
UHGV-1381698_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-1381698_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1381698_14	PHROG	phrog_2270	NA	unknown function
UHGV-1381698_14	UniRef90	UniRef90_A0A7X9R0S6	Peptidase S74 domain-containing protein	NA
UHGV-1381698_14	eggNOG-mapper	768726.HMPREF9178_1052	NA	NA
UHGV-1381698_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1381698_14	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-1381698_14	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1381698_14	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1381698_14	COG	COG4926	Phage-related protein	NA
UHGV-1381698_14	Structural annotation	PF14594, PF21582, TIGR01665, NF033675, COG4926	NA	NA
UHGV-1381698_15	PHROG	phrog_12683	NA	unknown function
UHGV-1381698_15	UniRef90	UniRef90_A0A081R6K4	ATP synthase F0 sector subunit C	NA
UHGV-1381698_15	eggNOG-mapper	1000588.HMPREF9965_1688	NA	NA
UHGV-1381698_16	PHROG	phrog_1554	NA	unknown function
UHGV-1381698_16	eggNOG-mapper	1095737.HMPREF1110_1749	NA	NA
UHGV-1381698_16	Structural annotation	PF07104	NA	NA
UHGV-1381698_17	PHROG	phrog_4257	NA	unknown function
UHGV-1381698_17	UniRef90	UniRef90_A0A139QI86	NA	NA
UHGV-1381698_17	eggNOG-mapper	1095737.HMPREF1110_1750	NA	NA
UHGV-1381698_18	PHROG	phrog_608	holin	lysis
UHGV-1381698_18	UniRef90	UniRef90_I0T448	Phage holin, LL-H family	NA
UHGV-1381698_18	eggNOG-mapper	936580.HMPREF1516_0703	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1381698_18	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1381698_18	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-1381698_19	PHROG	phrog_998	endolysin	lysis
UHGV-1381698_19	UniRef90	UniRef90_A0A1X0WMG3	Lysin	NA
UHGV-1381698_19	eggNOG-mapper	157924.Q9AF60_9CAUD	Bacteriophage peptidoglycan hydrolase	NA
UHGV-1381698_19	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-1381698_19	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1381698_19	Structural annotation	PF19127, PF05382, TIGR04035, NF008096, COG5263, COG3942	NA	NA
UHGV-1381698_20	KOfam	K14059	int; integrase	NA
UHGV-1381698_20	PHROG	phrog_1	integrase	integration and excision
UHGV-1381698_20	UniRef90	UniRef90_A0A4D6AVC8	Integrase	NA
UHGV-1381698_20	eggNOG-mapper	12402.Q708S2_9CAUD	Phage integrase family	NA
UHGV-1381698_20	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1381698_20	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1381698_20	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1381698_21	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-1381698_21	UniRef90	UniRef90_A0A0T8EK36	Abortive infection bacteriophage resistance protein	NA
UHGV-1381698_21	eggNOG-mapper	1123315.AUIP01000014_gene1920	Abi-like protein	NA
UHGV-1381698_21	PADLOC	AbiD	AbiD	Abi
UHGV-1381698_21	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-1381698_21	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-1381698_21	Structural annotation	PF07751, COG4823	NA	NA
UHGV-1381698_22	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-1381698_22	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-1381698_22	UniRef90	UniRef90_A0A098APY9	Exonuclease	NA
UHGV-1381698_22	eggNOG-mapper	1266845.Q783_01865	DNA polymerase III	NA
UHGV-1381698_22	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-1381698_22	Pfam	PF00929	Exonuclease	RNase_T
UHGV-1381698_22	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-1381698_22	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-1381698_22	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-1381698_22	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-1381698_23	PHROG	phrog_87	metallo-protease	other
UHGV-1381698_23	UniRef90	UniRef90_A0A0E9GZ75	NA	NA
UHGV-1381698_23	eggNOG-mapper	1035189.HMPREF9954_1970	IrrE N-terminal-like domain	NA
UHGV-1381698_23	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1381698_23	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1381698_23	Structural annotation	PF13058, MF_00745, NF003339, COG2856	NA	NA
UHGV-1381698_24	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1381698_24	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1381698_24	UniRef90	UniRef90_A0A1X1L1L5	Transcriptional regulator	NA
UHGV-1381698_24	eggNOG-mapper	1282664.H354_07515	sequence-specific DNA binding	NA
UHGV-1381698_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1381698_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1381698_24	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-1381698_25	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-1381698_25	UniRef90	UniRef90_E6KKA4	HTH cro/C1-type domain-containing protein	NA
UHGV-1381698_25	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1381698_26	PHROG	phrog_8322	NA	unknown function
UHGV-1381698_27	PHROG	phrog_3168	NA	unknown function
UHGV-1381698_27	UniRef90	UniRef90_Q7Y4L5	Gp9	NA
UHGV-1381698_28	PHROG	phrog_9949	NA	unknown function
UHGV-1381698_28	AcrCatalog	cluster_10982	NA	NA
UHGV-1381698_29	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1381698_29	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1381698_29	UniRef90	UniRef90_A0A1E8UD67	Oxidoreductase	NA
UHGV-1381698_29	eggNOG-mapper	768726.HMPREF9178_1088	AntA/AntB antirepressor	NA
UHGV-1381698_29	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1381698_29	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1381698_29	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1381698_29	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA