UHGV-1381813

Genome information

Genome length 39,627 bps

CDS count 63

Completeness 99.90% (high-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-1381813
vOTU ID	vOTU-069587
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0266625
BioSample	SAMEA3951700
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.07
Jumbo phage	No

Genome content
Genome length	39,627 bps
GC content	30.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	92.14%
Average CDS length	580.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1381813_1	UniRef90	UniRef90_UPI0018AA04BB	GNAT family N-acetyltransferase	NA
UHGV-1381813_1	eggNOG-mapper	1414720.CBYM010000014_gene2743	Acetyltransferase (GNAT) family	NA
UHGV-1381813_1	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-1381813_1	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-1381813_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1381813_2	PHROG	phrog_12727	endolysin	lysis
UHGV-1381813_2	UniRef90	UniRef90_A0A1C6EWY6	Autolytic lysozyme	NA
UHGV-1381813_2	eggNOG-mapper	1414720.CBYM010000014_gene2742	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1381813_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1381813_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1381813_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1381813_2	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-1381813_3	PHROG	phrog_9829	NA	unknown function
UHGV-1381813_3	UniRef90	UniRef90_R6GPV4	Imm	NA
UHGV-1381813_5	Structural annotation	PF08005, PF19972	NA	NA
UHGV-1381813_7	KOfam	K21478	icaB; poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase [EC:3.5.1.-]	NA
UHGV-1381813_7	UniRef90	UniRef90_UPI000F454F81	polysaccharide deacetylase family protein	NA
UHGV-1381813_7	Pfam	PF01522	Polysaccharide deacetylase	Polysacc_deac_1
UHGV-1381813_7	COG	COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	NA
UHGV-1381813_8	Structural annotation	PF13157, MF_01372, NF040827, COG3542	NA	NA
UHGV-1381813_9	PHROG	phrog_3558	tail protein	tail
UHGV-1381813_9	UniRef90	UniRef90_UPI0004B53C32	phage tail protein	NA
UHGV-1381813_9	eggNOG-mapper	1414720.CBYM010000040_gene1657	Phage minor structural protein, N-terminal	NA
UHGV-1381813_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1381813_9	COG	COG4926	Phage-related protein	NA
UHGV-1381813_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1381813_10	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1381813_10	UniRef90	UniRef90_A0A1C6K0K3	Phage-related protein	NA
UHGV-1381813_10	eggNOG-mapper	1414720.CBYM010000040_gene1656	PFAM Phage tail protein	NA
UHGV-1381813_10	COG	COG4722	Phage-related protein YomH	NA
UHGV-1381813_10	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-1381813_11	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-1381813_11	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1381813_11	UniRef90	UniRef90_UPI0018AC3B12	phage tail tape measure protein	NA
UHGV-1381813_11	eggNOG-mapper	632245.CLP_1658	Phage tail tape measure protein, TP901 family	NA
UHGV-1381813_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1381813_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1381813_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1381813_11	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1381813_12	eggNOG-mapper	536233.CLO_1369	NA	NA
UHGV-1381813_12	Structural annotation	PF11836	NA	NA
UHGV-1381813_13	PHROG	phrog_88	major tail protein	tail
UHGV-1381813_13	UniRef90	UniRef90_A0A6M1WMM9	Phage tail protein	NA
UHGV-1381813_13	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-1381813_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1381813_13	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1381813_14	PHROG	phrog_78	tail terminator	connector
UHGV-1381813_14	eggNOG-mapper	536233.CLO_1367	NA	NA
UHGV-1381813_14	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-1381813_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1381813_15	eggNOG-mapper	536233.CLO_1366	NA	NA
UHGV-1381813_15	Structural annotation	TIGR01725	NA	NA
UHGV-1381813_16	UniRef90	UniRef90_UPI0018A99880	phage head closure protein	NA
UHGV-1381813_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1381813_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1381813_17	UniRef90	UniRef90_UPI00164B66EB	head-tail connector protein	NA
UHGV-1381813_17	eggNOG-mapper	1414720.CBYM010000002_gene570	Phage gp6-like head-tail connector protein	NA
UHGV-1381813_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1381813_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1381813_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-1381813_18	UniRef90	UniRef90_UPI0006A6D693	phage major capsid protein	NA
UHGV-1381813_18	eggNOG-mapper	536233.CLO_1363	Phage capsid family	NA
UHGV-1381813_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1381813_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1381813_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1381813_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1381813_19	KOfam	K06904	NA	NA
UHGV-1381813_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1381813_19	UniRef90	UniRef90_UPI0009BAF53E	HK97 family phage prohead protease	NA
UHGV-1381813_19	eggNOG-mapper	1414720.CBYM010000001_gene698	Phage prohead protease, HK97 family	NA
UHGV-1381813_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1381813_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1381813_19	COG	COG3740	Phage head maturation protease	NA
UHGV-1381813_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1381813_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-1381813_20	UniRef90	UniRef90_UPI0018E4C584	phage portal protein	NA
UHGV-1381813_20	eggNOG-mapper	1285586.H131_21312	Portal protein	NA
UHGV-1381813_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1381813_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1381813_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1381813_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1381813_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1381813_21	UniRef90	UniRef90_K6DIF2	Phage terminase large subunit	NA
UHGV-1381813_21	eggNOG-mapper	1196031.ALEG01000039_gene1812	Terminase	NA
UHGV-1381813_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1381813_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1381813_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1381813_21	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1381813_22	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1381813_22	UniRef90	UniRef90_A0A1W1X5Z0	Phage terminase, small subunit, putative, P27 family	NA
UHGV-1381813_22	eggNOG-mapper	1196031.ALEG01000039_gene1811	Phage terminase, small subunit	NA
UHGV-1381813_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1381813_22	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1381813_22	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1381813_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1381813_23	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1381813_23	UniRef90	UniRef90_A0A2Z3TZC8	HNH endonuclease	NA
UHGV-1381813_23	eggNOG-mapper	632245.CLP_2922	NA	NA
UHGV-1381813_24	UniRef90	UniRef90_A0A1C6JMI4	Alternative sigma factor RpoH	NA
UHGV-1381813_24	eggNOG-mapper	1414720.CBYM010000002_gene578	NA	NA
UHGV-1381813_24	Structural annotation	PF04545, MF_00683, NF008895	NA	NA
UHGV-1381813_26	eggNOG-mapper	1414720.CBYM010000001_gene681	NA	NA
UHGV-1381813_29	PHROG	phrog_774	NA	unknown function
UHGV-1381813_29	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1381813_33	PHROG	phrog_15415	NA	unknown function
UHGV-1381813_34	UniRef90	UniRef90_R5F553	Phosphoribosylformylglycinamidine synthase II	NA
UHGV-1381813_34	eggNOG-mapper	1414720.CBYM010000040_gene1633	NA	NA
UHGV-1381813_38	PHROG	phrog_15483	NA	unknown function
UHGV-1381813_40	eggNOG-mapper	1415775.U729_3104	NA	NA
UHGV-1381813_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1381813_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1381813_41	UniRef90	UniRef90_A0A174F3N4	Single-stranded DNA-binding protein	NA
UHGV-1381813_41	eggNOG-mapper	1414720.CBYM010000010_gene3150	Single-stranded DNA-binding protein	NA
UHGV-1381813_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1381813_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1381813_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1381813_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1381813_41	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1381813_42	PHROG	phrog_17705	NA	unknown function
UHGV-1381813_43	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1381813_43	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1381813_43	UniRef90	UniRef90_A0A1C6K6Q7	Holliday junction resolvase	NA
UHGV-1381813_43	eggNOG-mapper	1499683.CCFF01000014_gene3920	Endodeoxyribonuclease RusA	NA
UHGV-1381813_43	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1381813_43	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1381813_43	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1381813_45	PHROG	phrog_25509	NA	unknown function
UHGV-1381813_45	eggNOG-mapper	1280689.AUJC01000003_gene942	NA	NA
UHGV-1381813_47	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1381813_47	UniRef90	UniRef90_A0A174F2L9	NA	NA
UHGV-1381813_47	eggNOG-mapper	1415775.U729_2588	DnaD domain protein	NA
UHGV-1381813_47	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1381813_47	Structural annotation	PF09681, PF17214, MF_01819, TIGR01714, COG5529	NA	NA
UHGV-1381813_49	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1381813_49	UniRef90	UniRef90_A0A4Q0VH70	Recombinase	NA
UHGV-1381813_49	eggNOG-mapper	1095743.HMPREF1054_1927	ERF superfamily	NA
UHGV-1381813_49	Pfam	PF04404	ERF superfamily	ERF
UHGV-1381813_49	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1381813_50	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1381813_50	UniRef90	UniRef90_UPI001A9B5D55	host-nuclease inhibitor Gam family protein	NA
UHGV-1381813_50	eggNOG-mapper	1415774.U728_1122	Bacteriophage Mu Gam like protein	NA
UHGV-1381813_50	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-1381813_50	Structural annotation	PF07352	NA	NA
UHGV-1381813_51	UniRef90	UniRef90_A0A1C6HV05	Spo0E like sporulation regulatory protein	NA
UHGV-1381813_51	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-1381813_52	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1381813_52	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1381813_52	UniRef90	UniRef90_UPI0009ACD5D8	phage antirepressor	NA
UHGV-1381813_52	eggNOG-mapper	1123315.AUIP01000001_gene1408	Antirepressor	NA
UHGV-1381813_52	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1381813_52	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1381813_52	COG	COG3617	Prophage antirepressor	NA
UHGV-1381813_52	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-1381813_54	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1381813_54	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1381813_54	UniRef90	UniRef90_A0A1C6KPF1	Helix-turn-helix domain	NA
UHGV-1381813_54	eggNOG-mapper	1123511.KB905843_gene1000	sequence-specific DNA binding	NA
UHGV-1381813_54	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-1381813_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1381813_54	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1381813_56	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1381813_56	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1381813_56	UniRef90	UniRef90_A0A1C6KN99	Transcriptional regulator, y4mF family	NA
UHGV-1381813_56	eggNOG-mapper	913865.DOT_2640	Transcriptional	NA
UHGV-1381813_56	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1381813_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1381813_56	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1381813_56	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1381813_57	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1381813_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1381813_57	UniRef90	UniRef90_UPI000774648C	helix-turn-helix domain-containing protein	NA
UHGV-1381813_57	eggNOG-mapper	1345695.CLSA_c30310	Helix-turn-helix XRE-family like proteins	NA
UHGV-1381813_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1381813_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1381813_57	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1381813_58	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1381813_58	UniRef90	UniRef90_UPI00105581E5	DnaD domain protein	NA
UHGV-1381813_58	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1381813_58	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1381813_58	Pfam	PF11638	DnaA N-terminal domain	DnaA_N
UHGV-1381813_58	COG	COG0593	Chromosomal replication initiation ATPase DnaA	NA
UHGV-1381813_59	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-1381813_59	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-1381813_59	UniRef90	UniRef90_A0A1C6JGT4	ALP_N domain-containing protein	NA
UHGV-1381813_59	eggNOG-mapper	1151292.QEW_0755	Heat shock 70 kDa protein	NA
UHGV-1381813_59	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-1381813_59	COG	COG0443	Molecular chaperone DnaK (HSP70)	NA
UHGV-1381813_59	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-1381813_60	PHROG	phrog_14888	NA	unknown function
UHGV-1381813_63	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1381813_63	PHROG	phrog_435	endolysin	lysis
UHGV-1381813_63	UniRef90	UniRef90_UPI001C8B8D79	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1381813_63	eggNOG-mapper	1414720.CBYM010000014_gene2742	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1381813_63	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1381813_63	Pfam	PF05036	SPOR domain	SPOR
UHGV-1381813_63	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA