UHGV-1381878

Genome information

Genome length 41,293 bps

CDS count 61

Completeness 99.40% (high-quality)

geNomad score 0.9736

Prediction confidence Confident

Genome information
Genome ID	UHGV-1381878
vOTU ID	vOTU-061416
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0275317
BioSample	SAMN02334162
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.40% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9736
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.2
Jumbo phage	No

Genome content
Genome length	41,293 bps
GC content	36.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	90.52%
Average CDS length	613.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1381878_1	PHROG	phrog_23208	virion structural protein	head and packaging
UHGV-1381878_2	PHROG	phrog_199	holin	lysis
UHGV-1381878_2	UniRef90	UniRef90_UPI00165145A5	phage holin family protein	NA
UHGV-1381878_2	eggNOG-mapper	1211817.CCAT010000039_gene115	Bacteriophage holin family	NA
UHGV-1381878_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1381878_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1381878_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1381878_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1381878_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1381878_3	PHROG	phrog_3088	amidase	lysis
UHGV-1381878_3	UniRef90	UniRef90_A0A173W7U2	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1381878_3	eggNOG-mapper	1232446.BAIE02000094_gene1162	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-1381878_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1381878_3	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1381878_3	Structural annotation	PF01510, PF18342, MF_04111, MF_01354, NF008758, NF038016, COG5632	NA	NA
UHGV-1381878_7	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-1381878_7	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-1381878_7	UniRef90	UniRef90_UPI00125F964B	ParM/StbA family protein	NA
UHGV-1381878_7	eggNOG-mapper	1232437.KL662073_gene1711	PRTRC system protein D	NA
UHGV-1381878_7	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-1381878_7	Pfam	PF21522	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
UHGV-1381878_7	COG	COG0443	Molecular chaperone DnaK (HSP70)	NA
UHGV-1381878_9	KOfam	K07448	mrr; restriction system protein	NA
UHGV-1381878_9	PHROG	phrog_19856	NA	unknown function
UHGV-1381878_9	UniRef90	UniRef90_UPI00137A199E	restriction endonuclease	NA
UHGV-1381878_9	eggNOG-mapper	324602.Caur_1678	PFAM restriction endonuclease	NA
UHGV-1381878_9	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1381878_9	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-1381878_9	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-1381878_10	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-1381878_10	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-1381878_10	UniRef90	UniRef90_A0A173W676	Septum-associated FtsK-like translocase of DNA	NA
UHGV-1381878_10	eggNOG-mapper	717231.Flexsi_2302	Ftsk_gamma	NA
UHGV-1381878_10	PADLOC	SspH_00004	SspH	SSP
UHGV-1381878_10	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-1381878_10	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-1381878_10	Structural annotation	PF01580, PF17854, MF_00348, NF041214, COG0433	NA	NA
UHGV-1381878_12	PHROG	phrog_9996	NA	unknown function
UHGV-1381878_12	Structural annotation	PF18954, NF041423	NA	NA
UHGV-1381878_13	eggNOG-mapper	632245.CLP_2217	DnaD domain protein	NA
UHGV-1381878_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1381878_14	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1381878_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1381878_14	UniRef90	UniRef90_UPI0018AB2E42	helix-turn-helix domain-containing protein	NA
UHGV-1381878_14	eggNOG-mapper	1414720.CBYM010000002_gene594	Helix-turn-helix XRE-family like proteins	NA
UHGV-1381878_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1381878_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1381878_14	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1381878_19	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1381878_19	UniRef90	UniRef90_A0A395WBX6	Phg_2220_C domain-containing protein	NA
UHGV-1381878_19	eggNOG-mapper	1194526.A284_08025	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-1381878_19	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1381878_19	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-1381878_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1381878_19	Structural annotation	PF13463, TIGR01889, COG1846	NA	NA
UHGV-1381878_20	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1381878_20	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1381878_20	UniRef90	UniRef90_UPI0018ABE567	ATP-binding protein	NA
UHGV-1381878_20	eggNOG-mapper	1232446.BAIE02000011_gene1611	NA	NA
UHGV-1381878_20	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-1381878_20	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1381878_20	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-1381878_22	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-1381878_22	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-1381878_24	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1381878_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1381878_25	PHROG	phrog_12305	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1381878_25	UniRef90	UniRef90_A0A6M1WS35	ParB N-terminal domain-containing protein	NA
UHGV-1381878_25	eggNOG-mapper	999411.HMPREF1092_01795	DNA binding	NA
UHGV-1381878_25	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1381878_25	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1381878_25	Structural annotation	PF02195, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-1381878_26	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1381878_26	UniRef90	UniRef90_UPI0018AB7FC5	ERF family protein	NA
UHGV-1381878_26	eggNOG-mapper	1300345.LF41_2379	ERF superfamily	NA
UHGV-1381878_26	Pfam	PF04404	ERF superfamily	ERF
UHGV-1381878_26	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1381878_27	PHROG	phrog_398	NA	unknown function
UHGV-1381878_27	UniRef90	UniRef90_UPI0018A98FED	putative HNHc nuclease	NA
UHGV-1381878_27	eggNOG-mapper	702450.CUW_0525	Putative HNHc nuclease	NA
UHGV-1381878_27	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-1381878_27	Structural annotation	PF16784	NA	NA
UHGV-1381878_30	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1381878_30	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1381878_30	UniRef90	UniRef90_A0A6I3NDD5	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1381878_30	eggNOG-mapper	702450.CUW_0526	Endodeoxyribonuclease RusA	NA
UHGV-1381878_30	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1381878_30	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1381878_30	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1381878_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1381878_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1381878_31	UniRef90	UniRef90_UPI0018AC862C	single-stranded DNA-binding protein	NA
UHGV-1381878_31	eggNOG-mapper	1295642.H839_08184	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1381878_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1381878_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1381878_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1381878_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1381878_31	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1381878_32	UniRef90	UniRef90_A0A173W828	NA	NA
UHGV-1381878_32	eggNOG-mapper	1307436.PBF_21963	NA	NA
UHGV-1381878_32	Pfam	PF18892	NA	DUF5651
UHGV-1381878_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1381878_34	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-1381878_34	UniRef90	UniRef90_K4ZI65	NA	NA
UHGV-1381878_34	eggNOG-mapper	1122917.KB899683_gene4793	NA	NA
UHGV-1381878_34	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-1381878_35	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1381878_35	UniRef90	UniRef90_A0A5P3XCD3	HNH endonuclease	NA
UHGV-1381878_35	eggNOG-mapper	536233.CLO_1807	HNH endonuclease	NA
UHGV-1381878_35	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1381878_35	Structural annotation	PF13392	NA	NA
UHGV-1381878_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1381878_36	UniRef90	UniRef90_A0A174PE36	RNA polymerase sigma factor	NA
UHGV-1381878_36	Structural annotation	PF06530, MF_00245, NF008895, COG1595	NA	NA
UHGV-1381878_37	KOfam	K07335	bmpA, bmpB, tmpC; basic membrane protein A and related proteins	NA
UHGV-1381878_37	UniRef90	UniRef90_A0A7X9BAU1	BMP family ABC transporter substrate-binding protein	NA
UHGV-1381878_37	eggNOG-mapper	702450.CUW_0479	ABC transporter substrate-binding protein PnrA-like	NA
UHGV-1381878_37	Pfam	PF02608	ABC transporter substrate-binding protein PnrA-like	Bmp
UHGV-1381878_37	COG	COG1744	Lipoprotein Med, regulator of KinD/Spo0A, PBP1-ABC superfamily, includes NupN	NA
UHGV-1381878_37	Structural annotation	PF02608, MF_01277, NF007936, COG1744	NA	NA
UHGV-1381878_38	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1381878_38	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1381878_38	UniRef90	UniRef90_UPI000BFB0EC6	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1381878_38	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-1381878_38	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1381878_38	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1381878_38	Structural annotation	PF01507, MF_00063, TIGR02055, COG0175	NA	NA
UHGV-1381878_41	PHROG	phrog_2650	NA	unknown function
UHGV-1381878_41	eggNOG-mapper	1406785.U5PTZ8_9CAUD	NA	NA
UHGV-1381878_42	Structural annotation	PF05129, NF041913, COG3529	NA	NA
UHGV-1381878_43	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1381878_43	UniRef90	UniRef90_UPI0018AABE90	helix-turn-helix domain-containing protein	NA
UHGV-1381878_43	eggNOG-mapper	500633.CLOHIR_01443	HNH endonuclease	NA
UHGV-1381878_43	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1381878_43	Structural annotation	PF07141	NA	NA
UHGV-1381878_44	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1381878_44	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1381878_44	UniRef90	UniRef90_UPI0018AA0488	PBSX family phage terminase large subunit	NA
UHGV-1381878_44	eggNOG-mapper	702450.CUW_0531	Phage terminase, large subunit, PBSX family	NA
UHGV-1381878_44	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1381878_44	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1381878_44	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1381878_44	COG	COG1783	Phage terminase large subunit	NA
UHGV-1381878_44	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1381878_45	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1381878_45	PHROG	phrog_1	integrase	integration and excision
UHGV-1381878_45	UniRef90	UniRef90_UPI0018A97687	site-specific integrase	NA
UHGV-1381878_45	eggNOG-mapper	397291.C804_01082	Phage integrase family	NA
UHGV-1381878_45	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-1381878_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1381878_45	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1381878_45	Structural annotation	PF00589, PF02899, MF_01807, NF040815, COG4974	NA	NA
UHGV-1381878_46	PHROG	phrog_64	portal protein	head and packaging
UHGV-1381878_46	UniRef90	UniRef90_UPI0018ABDF09	phage portal protein	NA
UHGV-1381878_46	eggNOG-mapper	1147137.I1TJV4_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1381878_46	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1381878_46	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1381878_46	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1381878_47	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1381878_47	UniRef90	UniRef90_UPI0018AADA80	minor capsid protein	NA
UHGV-1381878_47	eggNOG-mapper	649747.HMPREF0083_05316	Phage Mu protein F like protein	NA
UHGV-1381878_47	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1381878_47	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1381878_47	COG	COG2369	NA	NA
UHGV-1381878_47	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1381878_48	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1381878_48	UniRef90	UniRef90_UPI0018AB9873	NA	NA
UHGV-1381878_48	eggNOG-mapper	649747.HMPREF0083_05314	NA	NA
UHGV-1381878_48	Pfam	PF14265	NA	DUF4355
UHGV-1381878_48	Structural annotation	PF14265	NA	NA
UHGV-1381878_49	PHROG	phrog_544	major head protein	head and packaging
UHGV-1381878_49	UniRef90	UniRef90_UPI0018AA6742	N4-gp56 family major capsid protein	NA
UHGV-1381878_49	eggNOG-mapper	1211814.CAPG01000027_gene1311	NA	NA
UHGV-1381878_49	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1381878_49	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1381878_51	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1381878_51	UniRef90	UniRef90_UPI0018ABD9EA	phage head-tail connector protein	NA
UHGV-1381878_51	eggNOG-mapper	1071073.KI530547_gene3814	Phage gp6-like head-tail connector protein	NA
UHGV-1381878_51	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1381878_51	Structural annotation	PF05135	NA	NA
UHGV-1381878_53	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1381878_53	UniRef90	UniRef90_UPI0018AA6EE5	HK97 gp10 family phage protein	NA
UHGV-1381878_53	eggNOG-mapper	1123405.AUMM01000017_gene2703	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1381878_53	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1381878_53	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1381878_53	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-1381878_54	PHROG	phrog_176	tail terminator	connector
UHGV-1381878_54	eggNOG-mapper	1215114.BBIU01000011_gene1684	NA	NA
UHGV-1381878_54	Pfam	PF11367	NA	DUF3168
UHGV-1381878_54	Structural annotation	PF11367	NA	NA
UHGV-1381878_55	PHROG	phrog_1407	major tail protein	tail
UHGV-1381878_55	UniRef90	UniRef90_UPI001E5C0BDD	phage major tail protein, TP901-1 family	NA
UHGV-1381878_55	eggNOG-mapper	1034347.CAHJ01000091_gene1633	Phage tail tube protein	NA
UHGV-1381878_55	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1381878_55	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-1381878_55	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1381878_56	Structural annotation	PF16478	NA	NA
UHGV-1381878_58	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-1381878_58	UniRef90	UniRef90_A0A6A7KA30	Phage tail tape measure protein	NA
UHGV-1381878_58	eggNOG-mapper	1280689.AUJC01000007_gene3308	tape measure	NA
UHGV-1381878_58	COG	COG5283	Phage-related tail protein	NA
UHGV-1381878_58	Structural annotation	PF06791, COG3941	NA	NA
UHGV-1381878_59	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1381878_59	UniRef90	UniRef90_A0A1C5YFZ9	Phage-related protein	NA
UHGV-1381878_59	COG	COG4722	Phage-related protein YomH	NA
UHGV-1381878_59	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1381878_60	PHROG	phrog_8687	tail protein with peptidase activity	other
UHGV-1381878_60	UniRef90	UniRef90_A0A174PQ11	Phage-related protein	NA
UHGV-1381878_60	eggNOG-mapper	1151292.QEW_4523	Phage minor structural protein	NA
UHGV-1381878_60	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1381878_60	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1381878_60	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1381878_61	KOfam	K06238	COL6A; collagen type VI alpha	NA
UHGV-1381878_61	PHROG	phrog_5073	tail fiber protein	tail
UHGV-1381878_61	UniRef90	UniRef90_UPI001CD0305D	phage baseplate upper protein	NA
UHGV-1381878_61	eggNOG-mapper	1151292.QEW_0675	NA	NA
UHGV-1381878_61	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen