UHGV-1382079

Genome information

Genome length 36,212 bps

CDS count 46

Completeness 88.12% (medium-quality)

geNomad score 0.9686

Prediction confidence Confident

Genome information
Genome ID	UHGV-1382079
vOTU ID	vOTU-015165
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0246754
BioSample	SAMEA2738036
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9686
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.61
Jumbo phage	No

Genome content
Genome length	36,212 bps
GC content	66.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	92.24%
Average CDS length	728.15 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1382079_4	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1382079_5	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1382079_5	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1382079_5	UniRef90	UniRef90_UPI001C58A644	AAA family ATPase	NA
UHGV-1382079_5	eggNOG-mapper	1414742.V5R9D2_9CAUD	DNA helicase activity	NA
UHGV-1382079_5	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1382079_5	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1382079_5	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1382079_6	UniRef90	UniRef90_A0A7T8IIR0	Helix-turn-helix domain-containing protein	NA
UHGV-1382079_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1382079_6	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1382079_6	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-1382079_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1382079_7	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1382079_7	UniRef90	UniRef90_UPI0010A29903	phage antirepressor KilAC domain-containing protein	NA
UHGV-1382079_7	eggNOG-mapper	525246.HMPREF0058_0721	BRO family, N-terminal domain	NA
UHGV-1382079_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1382079_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1382079_7	COG	COG3617	Prophage antirepressor	NA
UHGV-1382079_7	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-1382079_9	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1382079_9	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1382079_9	UniRef90	UniRef90_UPI0006E24B3D	HNH endonuclease	NA
UHGV-1382079_9	eggNOG-mapper	1048339.KB913029_gene4935	PFAM HNH endonuclease	NA
UHGV-1382079_9	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1382079_10	PHROG	phrog_226	minor tail protein	tail
UHGV-1382079_10	UniRef90	UniRef90_A0A5J6TJA8	Terminase small subunit	NA
UHGV-1382079_10	eggNOG-mapper	1204524.K4HZK7_9CAUD	NA	NA
UHGV-1382079_11	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1382079_11	UniRef90	UniRef90_C0W4E7	Putative phage terminase, large subunit	NA
UHGV-1382079_11	eggNOG-mapper	525246.HMPREF0058_0741	Terminase	NA
UHGV-1382079_11	Pfam	PF14528	LAGLIDADG-like domain	LAGLIDADG_3
UHGV-1382079_11	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1382079_11	Structural annotation	PF20441, PF03354, PF01079, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1382079_12	PHROG	phrog_104	portal protein	head and packaging
UHGV-1382079_12	UniRef90	UniRef90_W1VBN6	Gp14 family protein	NA
UHGV-1382079_12	eggNOG-mapper	525246.HMPREF0058_0742	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1382079_12	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1382079_12	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1382079_13	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-1382079_13	eggNOG-mapper	1284679.HMPREF1626_03570	NA	NA
UHGV-1382079_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-1382079_15	UniRef90	UniRef90_A0A376CW96	Structural phage protein (Major head protein)	NA
UHGV-1382079_15	eggNOG-mapper	525246.HMPREF0058_0746	Phage capsid family	NA
UHGV-1382079_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1382079_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1382079_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1382079_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1382079_16	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1382079_16	UniRef90	UniRef90_UPI001364BA64	Gp19/Gp15/Gp42 family protein	NA
UHGV-1382079_16	eggNOG-mapper	1445613.JALM01000017_gene5878	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1382079_16	Structural annotation	PF09355	NA	NA
UHGV-1382079_17	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1382079_18	eggNOG-mapper	525246.HMPREF0058_0749	NA	NA
UHGV-1382079_18	Pfam	PF17395	NA	DUF5403
UHGV-1382079_18	Structural annotation	PF17395, COG5005	NA	NA
UHGV-1382079_19	Structural annotation	PF16807	NA	NA
UHGV-1382079_20	PHROG	phrog_117	major tail protein	tail
UHGV-1382079_20	eggNOG-mapper	1089547.KB913013_gene4688	Dystroglycan-type cadherin-like domains.	NA
UHGV-1382079_20	Pfam	PF01833	IPT/TIG domain	TIG
UHGV-1382079_20	COG	COG1577	Mevalonate kinase	NA
UHGV-1382079_20	Structural annotation	PF01833, PF04630, TIGR01603, COG3353, COG5437	NA	NA
UHGV-1382079_22	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-1382079_22	eggNOG-mapper	66875.JODY01000031_gene4103	nuclear chromosome segregation	NA
UHGV-1382079_22	COG	COG5283	Phage-related tail protein	NA
UHGV-1382079_23	Structural annotation	PF20195, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1382079_24	Structural annotation	PF20195, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1382079_25	PHROG	phrog_38009	tail protein	tail
UHGV-1382079_25	UniRef90	UniRef90_A0A2G1PH73	Fibronectin type-III domain-containing protein	NA
UHGV-1382079_25	eggNOG-mapper	1205910.B005_2762	NA	NA
UHGV-1382079_25	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-1382079_25	COG	COG3164	NA	NA
UHGV-1382079_25	Structural annotation	PF14594, PF00041, NF033848, COG3500, COG5456	NA	NA
UHGV-1382079_26	PHROG	phrog_9116	tail protein	tail
UHGV-1382079_26	UniRef90	UniRef90_A0A8J7LAJ2	Tail fiber protein	NA
UHGV-1382079_26	eggNOG-mapper	694427.Palpr_1970	tail collar domain protein	NA
UHGV-1382079_26	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-1382079_26	COG	COG4675	Phage tail collar domain	NA
UHGV-1382079_26	Structural annotation	PF07484, COG4675	NA	NA
UHGV-1382079_27	eggNOG-mapper	1122179.KB890491_gene4478	Hep Hag repeat protein	NA
UHGV-1382079_27	COG	COG5295	Autotransporter adhesin	NA
UHGV-1382079_29	KOfam	K07273	acm; lysozyme	NA
UHGV-1382079_29	PHROG	phrog_291	endolysin	lysis
UHGV-1382079_29	UniRef90	UniRef90_UPI001F4E41A2	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1382079_29	eggNOG-mapper	1120944.JONS01000016_gene1221	NA	NA
UHGV-1382079_29	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1382079_31	UniRef90	UniRef90_UPI0015852931	NA	NA
UHGV-1382079_33	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1382079_33	UniRef90	UniRef90_A0A495A896	Mrr_cat domain-containing protein	NA
UHGV-1382079_33	eggNOG-mapper	645127.ckrop_1618	NA	NA
UHGV-1382079_33	Structural annotation	COG1591	NA	NA
UHGV-1382079_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1382079_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1382079_39	UniRef90	UniRef90_UPI001E29767C	single-stranded DNA-binding protein	NA
UHGV-1382079_39	eggNOG-mapper	452863.Achl_4638	Single-stranded DNA-binding protein	NA
UHGV-1382079_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1382079_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1382079_39	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-1382079_41	PHROG	phrog_4171	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1382079_41	UniRef90	UniRef90_UPI0015F95158	recombinase RecT	NA
UHGV-1382079_41	eggNOG-mapper	521393.JH806633_gene1243	NA	NA
UHGV-1382079_41	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-1382079_43	COG	COG3177	Fic family protein	NA
UHGV-1382079_44	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1382079_44	UniRef90	UniRef90_A0A3G2KHS4	Exonuclease	NA
UHGV-1382079_44	eggNOG-mapper	521393.JH806633_gene1242	Belongs to the helicase family. UvrD subfamily	NA
UHGV-1382079_44	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-1382079_44	COG	COG2887	RecB family exonuclease	NA
UHGV-1382079_44	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1382079_45	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-1382079_45	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-1382079_45	UniRef90	UniRef90_UPI001CD290D1	dCTP deaminase	NA
UHGV-1382079_45	eggNOG-mapper	644283.Micau_0114	Belongs to the dCTP deaminase family	NA
UHGV-1382079_45	Pfam	PF00692	dUTPase	dUTPase
UHGV-1382079_45	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-1382079_45	COG	COG0717	dCTP deaminase	NA
UHGV-1382079_45	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA