UHGV-1382153

Genome information

Genome length 43,099 bps

CDS count 53

Completeness 100.00% (complete)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-1382153
vOTU ID	vOTU-006341
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0285348
BioSample	SAMEA2466932
Country	France
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.11
Jumbo phage	No

Genome content
Genome length	43,099 bps
GC content	33.61%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.92%
Average CDS length	766.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1382153_1	PHROG	phrog_14010	NA	unknown function
UHGV-1382153_1	UniRef90	UniRef90_A0A7U3RMS0	Ribosomal large subunit pseudouridine synthase B	NA
UHGV-1382153_1	eggNOG-mapper	693979.Bache_2807	NA	NA
UHGV-1382153_1	Pfam	PF20186	NA	DUF6549
UHGV-1382153_1	Structural annotation	PF20186	NA	NA
UHGV-1382153_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1382153_2	PHROG	phrog_822	amidase	lysis
UHGV-1382153_2	UniRef90	UniRef90_A0A7U3MWA9	Peptidoglycan recognition protein	NA
UHGV-1382153_2	eggNOG-mapper	880526.KE386488_gene341	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1382153_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1382153_2	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1382153_2	Structural annotation	PF01510, MF_04111, NF008758, COG3023	NA	NA
UHGV-1382153_3	PHROG	phrog_15037	NA	unknown function
UHGV-1382153_3	UniRef90	UniRef90_A0A7U3RL93	Holin (Fragment)	NA
UHGV-1382153_3	eggNOG-mapper	411476.BACOVA_03950	NA	NA
UHGV-1382153_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1382153_4	PHROG	phrog_36068	NA	unknown function
UHGV-1382153_4	UniRef90	UniRef90_A0A2Z2GXM3	Neck passage structure	NA
UHGV-1382153_4	eggNOG-mapper	1349822.NSB1T_12060	NA	NA
UHGV-1382153_5	PHROG	phrog_35885	NA	unknown function
UHGV-1382153_5	UniRef90	UniRef90_A0A7U3RL91	Putative tail fiber	NA
UHGV-1382153_5	eggNOG-mapper	1176422.I6S2N2_9CAUD	NA	NA
UHGV-1382153_5	Structural annotation	COG5437	NA	NA
UHGV-1382153_6	PHROG	phrog_19383	NA	unknown function
UHGV-1382153_6	eggNOG-mapper	1176422.I6R1A9_9CAUD	NA	NA
UHGV-1382153_6	Structural annotation	PF17994, NF033675	NA	NA
UHGV-1382153_7	PHROG	phrog_37298	NA	unknown function
UHGV-1382153_7	UniRef90	UniRef90_UPI0018A9A239	phage tail tape measure protein	NA
UHGV-1382153_7	eggNOG-mapper	1121101.HMPREF1532_02608	domain protein	NA
UHGV-1382153_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1382153_7	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1382153_7	Structural annotation	PF10145, PF02321, TIGR01760, COG5280	NA	NA
UHGV-1382153_8	PHROG	phrog_8914	virion structural protein	head and packaging
UHGV-1382153_8	UniRef90	UniRef90_A0A516L945	Putative structural protein	NA
UHGV-1382153_8	eggNOG-mapper	99179.B5TR86_9CAUD	NA	NA
UHGV-1382153_11	PHROG	phrog_8145	NA	unknown function
UHGV-1382153_11	eggNOG-mapper	1349822.NSB1T_02965	NA	NA
UHGV-1382153_12	PHROG	phrog_6195	tail protein	tail
UHGV-1382153_12	UniRef90	UniRef90_A0A7U3MW91	Virion morphogenesis protein	NA
UHGV-1382153_12	eggNOG-mapper	1121101.HMPREF1532_02604	NA	NA
UHGV-1382153_13	PHROG	phrog_8189	NA	unknown function
UHGV-1382153_13	eggNOG-mapper	1105171.H2A0E2_9CAUD	NA	NA
UHGV-1382153_13	Structural annotation	PF02839, NF041539	NA	NA
UHGV-1382153_14	PHROG	phrog_7231	virion structural protein	head and packaging
UHGV-1382153_14	UniRef90	UniRef90_A0A7U3MY95	Major capsid protein	NA
UHGV-1382153_14	eggNOG-mapper	99179.B5TRC7_9CAUD	NA	NA
UHGV-1382153_14	Structural annotation	PF05065, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-1382153_15	PHROG	phrog_7970	virion structural protein	head and packaging
UHGV-1382153_15	UniRef90	UniRef90_A0A7U3MYE1	Putative capsid associated protein	NA
UHGV-1382153_15	eggNOG-mapper	1176422.I6S6X7_9CAUD	NA	NA
UHGV-1382153_15	Structural annotation	PF21662	NA	NA
UHGV-1382153_17	PHROG	phrog_30900	NA	unknown function
UHGV-1382153_17	UniRef90	UniRef90_A0A7U3RMT1	Inner membrane protein	NA
UHGV-1382153_18	PHROG	phrog_7376	portal protein	head and packaging
UHGV-1382153_18	UniRef90	UniRef90_A0A7U3MXY7	Portal protein	NA
UHGV-1382153_18	eggNOG-mapper	1121101.HMPREF1532_02599	NA	NA
UHGV-1382153_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1382153_20	PHROG	phrog_8193	major head protein	head and packaging
UHGV-1382153_20	UniRef90	UniRef90_A0A7U3MWC4	Putative tail protein	NA
UHGV-1382153_20	eggNOG-mapper	1105171.H2A0E7_9CAUD	NA	NA
UHGV-1382153_20	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1382153_21	eggNOG-mapper	1236514.BAKL01000004_gene487	NA	NA
UHGV-1382153_23	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1382153_23	UniRef90	UniRef90_UPI001E40D079	phage terminase large subunit	NA
UHGV-1382153_23	eggNOG-mapper	1105171.H2A0E8_9CAUD	intein-mediated protein splicing	NA
UHGV-1382153_23	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-1382153_23	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-1382153_25	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1382153_25	UniRef90	UniRef90_UPI00189DC102	helix-turn-helix domain containing protein	NA
UHGV-1382153_25	eggNOG-mapper	457424.BFAG_02415	Helix-turn-helix of insertion element transposase	NA
UHGV-1382153_25	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-1382153_25	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1382153_25	Structural annotation	PF07141	NA	NA
UHGV-1382153_26	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1382153_26	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1382153_26	UniRef90	UniRef90_A0A1Y4JY04	ParB domain-containing protein	NA
UHGV-1382153_26	eggNOG-mapper	1211035.CD30_13045	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1382153_26	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1382153_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1382153_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1382153_26	COG	COG0863	DNA modification methylase	NA
UHGV-1382153_26	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF008572, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1382153_27	UniRef90	UniRef90_A0A7U3MW84	Nucleoside triphosphate pyrophosphohydrolase	NA
UHGV-1382153_27	eggNOG-mapper	1121098.HMPREF1534_01085	NA	NA
UHGV-1382153_27	Structural annotation	PF04447, MF_01020, TIGR03188, TIGR04412, COG0140	NA	NA
UHGV-1382153_29	PHROG	phrog_31813	NA	unknown function
UHGV-1382153_29	eggNOG-mapper	1453500.AT05_06350	regulation of response to stimulus	NA
UHGV-1382153_29	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-1382153_29	Structural annotation	PF20530	NA	NA
UHGV-1382153_31	PHROG	phrog_9236	pyrophosphatase	other
UHGV-1382153_31	eggNOG-mapper	762982.HMPREF9442_01215	NA	NA
UHGV-1382153_32	PHROG	phrog_12005	NA	unknown function
UHGV-1382153_34	PHROG	phrog_3193	NA	unknown function
UHGV-1382153_34	UniRef90	UniRef90_UPI0018A95222	ASCH domain-containing protein	NA
UHGV-1382153_34	Structural annotation	MF_00684, NF008917, COG3097	NA	NA
UHGV-1382153_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1382153_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1382153_35	UniRef90	UniRef90_UPI000C76D2C8	single-stranded DNA-binding protein	NA
UHGV-1382153_35	eggNOG-mapper	742767.HMPREF9456_02057	Single-stranded DNA-binding protein	NA
UHGV-1382153_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1382153_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1382153_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1382153_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1382153_35	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1382153_37	PHROG	phrog_20279	NA	unknown function
UHGV-1382153_37	UniRef90	UniRef90_A0A7U3RL86	Recombination protein/HNH endonuclease	NA
UHGV-1382153_37	eggNOG-mapper	1176422.I6RTQ2_9CAUD	HNH endonuclease	NA
UHGV-1382153_38	PHROG	phrog_9513	NA	unknown function
UHGV-1382153_39	PHROG	phrog_23774	NA	unknown function
UHGV-1382153_39	UniRef90	UniRef90_A0A7U3MW72	Protein NinB/nuclease	NA
UHGV-1382153_39	eggNOG-mapper	1105171.H2A0G1_9CAUD	NA	NA
UHGV-1382153_39	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1382153_40	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1382153_40	PHROG	phrog_1499	NA	unknown function
UHGV-1382153_40	UniRef90	UniRef90_A0A7U3MW77	Condensin/DNA repair protein	NA
UHGV-1382153_40	eggNOG-mapper	744980.TRICHSKD4_3710	AAA domain	NA
UHGV-1382153_40	Pfam	PF13476	AAA domain	AAA_23
UHGV-1382153_40	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1382153_40	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-1382153_41	Structural annotation	TIGR04203	NA	NA
UHGV-1382153_42	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1382153_42	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1382153_42	UniRef90	UniRef90_A0A516L909	Putative modification methylase	NA
UHGV-1382153_42	eggNOG-mapper	553219.CAMSH0001_2034	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1382153_42	PADLOC	MTase_II_00051	Type II methyltransferase	RM
UHGV-1382153_42	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1382153_42	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-1382153_42	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-1382153_44	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1382153_44	UniRef90	UniRef90_A0A7U3MXY0	Holliday junction resolvase	NA
UHGV-1382153_44	eggNOG-mapper	1176422.I6R9X3_9CAUD	nucleic acid binding	NA
UHGV-1382153_44	Structural annotation	PF07066, MF_00034, NF000711, COG0817	NA	NA
UHGV-1382153_45	PHROG	phrog_34953	NA	unknown function
UHGV-1382153_45	eggNOG-mapper	99179.B5TRA8_9CAUD	NA	NA
UHGV-1382153_46	PHROG	phrog_6969	NA	unknown function
UHGV-1382153_46	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-1382153_46	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1382153_46	Structural annotation	PF01978, MF_01909, TIGR01610, COG1675	NA	NA
UHGV-1382153_47	eggNOG-mapper	1356854.N007_04835	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1382153_47	Pfam	PF18897	Recombination directionality factor-like	Gp3-like
UHGV-1382153_47	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1382153_47	Structural annotation	PF18897	NA	NA
UHGV-1382153_48	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1382153_48	UniRef90	UniRef90_A0A7U3RL83	Exonuclease	NA
UHGV-1382153_48	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1382153_50	UniRef90	UniRef90_A0A7U3RL19	Helix-turn-helix transcriptional regulator	NA
UHGV-1382153_50	eggNOG-mapper	1105171.H2A0B0_9CAUD	NA	NA
UHGV-1382153_53	PHROG	phrog_32997	NA	unknown function
UHGV-1382153_53	UniRef90	UniRef90_UPI0018ABF756	ribosomal large subunit pseudouridine synthase B	NA
UHGV-1382153_53	eggNOG-mapper	1122981.AUME01000026_gene562	NA	NA