UHGV-1382269

Genome information

Genome length 23,585 bps

CDS count 26

Completeness 66.95% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-1382269
vOTU ID	vOTU-034022
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0172742
BioSample	SAMEA2738099
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.61
Jumbo phage	No

Genome content
Genome length	23,585 bps
GC content	31.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	26
CDS density	94.67%
Average CDS length	862.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1382269_1	PHROG	phrog_1309	endolysin	lysis
UHGV-1382269_1	eggNOG-mapper	1321820.HMPREF1983_00914	CHAP domain	NA
UHGV-1382269_1	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-1382269_2	PHROG	phrog_1129	holin	lysis
UHGV-1382269_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1382269_3	PHROG	phrog_32123	NA	unknown function
UHGV-1382269_3	UniRef90	UniRef90_UPI001BD93596	collagen-like protein	NA
UHGV-1382269_3	eggNOG-mapper	1005705.HMPREF9967_1058	domain, Protein	NA
UHGV-1382269_3	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1382269_3	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1382269_3	Structural annotation	PF10651, NF032891	NA	NA
UHGV-1382269_4	PHROG	phrog_4257	NA	unknown function
UHGV-1382269_4	UniRef90	UniRef90_A0A139QI86	NA	NA
UHGV-1382269_4	eggNOG-mapper	562981.HMPREF0428_00966	NA	NA
UHGV-1382269_5	UniRef90	UniRef90_A0A133ZZX2	30S ribosomal protein S16 domain protein	NA
UHGV-1382269_6	eggNOG-mapper	1118055.CAGU01000028_gene104	NA	NA
UHGV-1382269_6	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-1382269_6	Structural annotation	PF07104	NA	NA
UHGV-1382269_8	PHROG	phrog_1210	PblB-type receptor binding	other
UHGV-1382269_8	UniRef90	UniRef90_UPI000930399F	tail fiber domain-containing protein	NA
UHGV-1382269_8	eggNOG-mapper	562981.HMPREF0428_00970	Phage minor structural protein	NA
UHGV-1382269_8	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1382269_8	COG	COG1511	NA	NA
UHGV-1382269_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1382269_9	eggNOG-mapper	1321820.HMPREF1983_00923	tail component	NA
UHGV-1382269_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-1382269_9	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1382269_10	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1382269_10	UniRef90	UniRef90_UPI000931FE8C	phage tail tape measure protein	NA
UHGV-1382269_10	eggNOG-mapper	396359.Q0SPL2_9CAUD	peptidoglycan catabolic process	NA
UHGV-1382269_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1382269_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1382269_10	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1382269_11	UniRef90	UniRef90_A0A174UN01	Phage-like protein	NA
UHGV-1382269_11	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-1382269_13	PHROG	phrog_88	major tail protein	tail
UHGV-1382269_13	UniRef90	UniRef90_UPI00156DA45B	phage tail protein	NA
UHGV-1382269_13	eggNOG-mapper	471875.RUMLAC_02245	phage major tail protein, phi13 family	NA
UHGV-1382269_13	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1382269_13	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1382269_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1382269_15	UniRef90	UniRef90_UPI000E0BDB75	HK97 gp10 family phage protein	NA
UHGV-1382269_15	eggNOG-mapper	1033744.CAEL01000029_gene1278	NA	NA
UHGV-1382269_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1382269_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1382269_16	PHROG	phrog_25	head closure Hc1	connector
UHGV-1382269_16	UniRef90	UniRef90_UPI0009311A76	phage head closure protein	NA
UHGV-1382269_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1382269_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1382269_17	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1382269_17	UniRef90	UniRef90_UPI000931A3A2	head-tail connector protein	NA
UHGV-1382269_17	eggNOG-mapper	796940.HMPREF9628_00142	Phage gp6-like head-tail connector protein	NA
UHGV-1382269_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1382269_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1382269_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1382269_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-1382269_18	UniRef90	UniRef90_UPI0009306DB3	phage major capsid protein	NA
UHGV-1382269_18	eggNOG-mapper	1399942.U3PDR8_9CAUD	peptidase activity	NA
UHGV-1382269_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1382269_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1382269_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1382269_19	KOfam	K06904	NA	NA
UHGV-1382269_19	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1382269_19	UniRef90	UniRef90_UPI0009313360	HK97 family phage prohead protease	NA
UHGV-1382269_19	eggNOG-mapper	1399942.U3PIW1_9CAUD	peptidase activity	NA
UHGV-1382269_19	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1382269_19	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1382269_19	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1382269_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-1382269_20	UniRef90	UniRef90_UPI000E0C8FF8	phage portal protein	NA
UHGV-1382269_20	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-1382269_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1382269_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1382269_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1382269_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1382269_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1382269_21	UniRef90	UniRef90_UPI000AD5179C	terminase large subunit	NA
UHGV-1382269_21	eggNOG-mapper	397288.C806_00076	Phage Terminase	NA
UHGV-1382269_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1382269_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1382269_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1382269_21	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1382269_22	PHROG	phrog_13845	NA	unknown function
UHGV-1382269_22	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-1382269_23	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1382269_23	UniRef90	UniRef90_I2E873	HNHc domain-containing protein (Fragment)	NA
UHGV-1382269_23	eggNOG-mapper	1399942.U3PDW1_9CAUD	HNH endonuclease	NA
UHGV-1382269_23	Pfam	PF13391	HNH endonuclease	HNH_2