UHGV-1382694

Genome information

Genome length 43,315 bps

CDS count 58

Completeness 100.00% (complete)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-1382694
vOTU ID	vOTU-046155
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0286027
BioSample	SAMN06115522
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.93
Jumbo phage	No

Genome content
Genome length	43,315 bps
GC content	57.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	95.09%
Average CDS length	714.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1382694_2	Structural annotation	PF21291, TIGR03070, COG3655	NA	NA
UHGV-1382694_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1382694_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1382694_7	UniRef90	UniRef90_A0A1Y4L0A2	HTH cro/C1-type domain-containing protein	NA
UHGV-1382694_7	eggNOG-mapper	411471.SUBVAR_05818	sequence-specific DNA binding	NA
UHGV-1382694_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1382694_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1382694_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1382694_11	UniRef90	UniRef90_A7VNR4	HTH cro/C1-type domain-containing protein	NA
UHGV-1382694_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1382694_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1382694_11	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-1382694_12	KOfam	K14059	int; integrase	NA
UHGV-1382694_12	PHROG	phrog_1	integrase	integration and excision
UHGV-1382694_12	UniRef90	UniRef90_A0A2Z4QB94	Tyr recombinase domain-containing protein	NA
UHGV-1382694_12	eggNOG-mapper	641112.ACOK01000111_gene1860	Phage integrase family	NA
UHGV-1382694_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1382694_12	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1382694_12	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1382694_13	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-1382694_13	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-1382694_16	PHROG	phrog_5783	NA	unknown function
UHGV-1382694_16	UniRef90	UniRef90_A0A7X2P6J8	NYN domain-containing protein	NA
UHGV-1382694_16	eggNOG-mapper	742742.HMPREF9452_00448	NYN domain	NA
UHGV-1382694_16	Pfam	PF01936	NYN domain	NYN
UHGV-1382694_16	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-1382694_16	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-1382694_17	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-1382694_17	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-1382694_17	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1382694_17	Structural annotation	PF04545, MF_00245, TIGR02985, COG2739	NA	NA
UHGV-1382694_18	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1382694_18	PHROG	phrog_1794	amidase	lysis
UHGV-1382694_18	UniRef90	UniRef90_A0A3D4VSU2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1382694_18	eggNOG-mapper	411470.RUMGNA_02087	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1382694_18	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1382694_18	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1382694_18	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1382694_19	PHROG	phrog_6918	holin	lysis
UHGV-1382694_19	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-1382694_19	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-1382694_19	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1382694_19	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-1382694_21	PHROG	phrog_937	hemolysin	other
UHGV-1382694_21	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-1382694_22	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-1382694_22	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-1382694_22	UniRef90	UniRef90_A0A1I1Z9R5	Calcineurin-like phosphoesterase	NA
UHGV-1382694_22	eggNOG-mapper	203275.BFO_0575	Bacterial group 2 Ig-like protein	NA
UHGV-1382694_22	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1382694_22	COG	COG5492	NA	NA
UHGV-1382694_22	Structural annotation	PF02368, PF09423, MF_00575, NF003743, NF005261, COG5492	NA	NA
UHGV-1382694_23	PHROG	phrog_5240	tail fiber protein	tail
UHGV-1382694_23	UniRef90	UniRef90_R6LGA5	SGNH_hydro domain-containing protein	NA
UHGV-1382694_23	Structural annotation	PF16255, COG2755	NA	NA
UHGV-1382694_24	eggNOG-mapper	1232443.BAIA02000078_gene14	nuclear chromosome segregation	NA
UHGV-1382694_24	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1382694_25	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-1382694_25	PHROG	phrog_819	tail protein	tail
UHGV-1382694_25	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1382694_25	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1382694_26	Structural annotation	PF18962, NF011773	NA	NA
UHGV-1382694_27	PHROG	phrog_22978	NA	unknown function
UHGV-1382694_27	eggNOG-mapper	1519439.JPJG01000060_gene1905	NA	NA
UHGV-1382694_27	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-1382694_28	UniRef90	UniRef90_R5DCX9	PG_binding_1 domain-containing protein	NA
UHGV-1382694_28	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-1382694_30	eggNOG-mapper	537007.BLAHAN_05255	NA	NA
UHGV-1382694_31	PHROG	phrog_12105	NA	unknown function
UHGV-1382694_32	PHROG	phrog_15239	NA	unknown function
UHGV-1382694_33	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1382694_33	UniRef90	UniRef90_A0A2V2CFL5	N4-gp56 family major capsid protein	NA
UHGV-1382694_33	eggNOG-mapper	1410650.JHWL01000003_gene2830	NA	NA
UHGV-1382694_33	Pfam	PF13252	NA	DUF4043
UHGV-1382694_33	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1382694_33	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1382694_34	PHROG	phrog_13908	NA	unknown function
UHGV-1382694_34	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-1382694_35	PHROG	phrog_156	portal protein	head and packaging
UHGV-1382694_35	eggNOG-mapper	1410650.JHWL01000003_gene2833	NA	NA
UHGV-1382694_35	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1382694_36	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1382694_36	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-1382694_36	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-1382694_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1382694_37	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1382694_37	UniRef90	UniRef90_A0A810Q5R0	Phage terminase large subunit	NA
UHGV-1382694_37	eggNOG-mapper	1410650.JHWL01000003_gene2834	NA	NA
UHGV-1382694_37	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1382694_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-1382694_37	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1382694_40	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1382694_40	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-1382694_40	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-1382694_41	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-1382694_45	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1382694_45	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-1382694_45	eggNOG-mapper	693746.OBV_25250	NA	NA
UHGV-1382694_45	Pfam	PF06356	NA	DUF1064
UHGV-1382694_45	Structural annotation	PF06356	NA	NA
UHGV-1382694_48	PHROG	phrog_31029	NA	unknown function
UHGV-1382694_49	PHROG	phrog_38832	NA	unknown function
UHGV-1382694_49	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-1382694_49	Structural annotation	PF18300, MF_01549, NF007981	NA	NA
UHGV-1382694_50	KOfam	K19170	dndC; DNA sulfur modification protein DndC	NA
UHGV-1382694_50	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1382694_50	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-1382694_50	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1382694_50	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1382694_50	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1382694_50	Structural annotation	PF01507, MF_00064, TIGR02039, COG0175	NA	NA
UHGV-1382694_51	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1382694_51	PHROG	phrog_363	DNA methyltransferase	other
UHGV-1382694_51	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-1382694_51	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-1382694_51	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1382694_51	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1382694_51	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1382694_51	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1382694_51	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1382694_54	Structural annotation	PF05082	NA	NA
UHGV-1382694_56	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-1382694_56	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA