UHGV-1382728

Genome information

Genome length 39,548 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-1382728
vOTU ID	vOTU-069501
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0266204
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.63
Jumbo phage	No

Genome content
Genome length	39,548 bps
GC content	51.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	93.44%
Average CDS length	665.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1382728_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1382728_1	PHROG	phrog_95	integrase	integration and excision
UHGV-1382728_1	UniRef90	UniRef90_UPI001E3451E3	recombinase family protein	NA
UHGV-1382728_1	eggNOG-mapper	1235792.C808_00650	Resolvase, N terminal domain	NA
UHGV-1382728_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1382728_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-1382728_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1382728_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1382728_1	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-1382728_2	PHROG	phrog_2700	NA	unknown function
UHGV-1382728_2	UniRef90	UniRef90_UPI000CDA5767	SHOCT domain-containing protein	NA
UHGV-1382728_2	eggNOG-mapper	410358.Mlab_1036	Short C-terminal domain	NA
UHGV-1382728_2	Pfam	PF14472	NA	DUF4429
UHGV-1382728_2	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-1382728_2	Structural annotation	PF08000, COG3402	NA	NA
UHGV-1382728_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1382728_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1382728_3	UniRef90	UniRef90_UPI000CDA9A02	helix-turn-helix domain-containing protein	NA
UHGV-1382728_3	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1382728_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1382728_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1382728_3	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-1382728_4	UniRef90	UniRef90_A0A3S5FBF3	HTH cro/C1-type domain-containing protein	NA
UHGV-1382728_4	eggNOG-mapper	478749.BRYFOR_07571	NA	NA
UHGV-1382728_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1382728_11	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1382728_11	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-1382728_11	Structural annotation	PF01446	NA	NA
UHGV-1382728_12	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-1382728_12	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-1382728_12	UniRef90	UniRef90_A0A1C6E4D9	Ribonuclease H	NA
UHGV-1382728_12	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-1382728_12	Pfam	PF00075	RNase H	RNase_H
UHGV-1382728_12	COG	COG0328	Ribonuclease HI	NA
UHGV-1382728_13	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-1382728_14	PHROG	phrog_8470	NA	unknown function
UHGV-1382728_14	UniRef90	UniRef90_UPI001E5C1444	PcfJ domain-containing protein	NA
UHGV-1382728_14	eggNOG-mapper	999413.HMPREF1094_04705	PcfJ-like protein	NA
UHGV-1382728_14	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-1382728_14	Structural annotation	PF14284	NA	NA
UHGV-1382728_16	PHROG	phrog_15077	NA	unknown function
UHGV-1382728_16	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-1382728_16	eggNOG-mapper	1235792.C808_00069	NA	NA
UHGV-1382728_16	Structural annotation	PF11300, NF033725	NA	NA
UHGV-1382728_20	eggNOG-mapper	1235798.C817_01884	NA	NA
UHGV-1382728_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1382728_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1382728_22	UniRef90	UniRef90_UPI001E432FEE	single-stranded DNA-binding protein	NA
UHGV-1382728_22	eggNOG-mapper	471875.RUMLAC_01617	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1382728_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1382728_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1382728_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1382728_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1382728_22	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1382728_24	PHROG	phrog_7566	NA	unknown function
UHGV-1382728_24	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-1382728_26	PHROG	phrog_11237	NA	unknown function
UHGV-1382728_26	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-1382728_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1382728_27	UniRef90	UniRef90_UPI001E29C5AC	HNH endonuclease	NA
UHGV-1382728_27	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-1382728_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1382728_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1382728_30	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1382728_30	UniRef90	UniRef90_A0A1M6MVK9	Phage terminase, small subunit	NA
UHGV-1382728_30	eggNOG-mapper	1235792.C808_00082	NA	NA
UHGV-1382728_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1382728_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1382728_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1382728_31	UniRef90	UniRef90_UPI001E558347	terminase large subunit	NA
UHGV-1382728_31	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-1382728_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1382728_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1382728_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1382728_31	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1382728_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-1382728_32	UniRef90	UniRef90_UPI001E28AA12	phage portal protein	NA
UHGV-1382728_32	eggNOG-mapper	1235792.C808_00084	Phage portal protein, HK97 family	NA
UHGV-1382728_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1382728_32	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1382728_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1382728_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1382728_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1382728_33	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1382728_33	UniRef90	UniRef90_UPI001E5033E0	Clp protease ClpP	NA
UHGV-1382728_33	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-1382728_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1382728_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1382728_33	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1382728_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-1382728_34	UniRef90	UniRef90_UPI001E2BCFCB	phage major capsid protein	NA
UHGV-1382728_34	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-1382728_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1382728_34	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-1382728_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1382728_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1382728_34	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1382728_35	PHROG	phrog_749	NA	unknown function
UHGV-1382728_35	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-1382728_36	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-1382728_36	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1382728_37	UniRef90	UniRef90_UPI001E4E7E25	HK97 gp10 family phage protein	NA
UHGV-1382728_37	eggNOG-mapper	1235792.C808_00089	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1382728_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1382728_37	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1382728_38	PHROG	phrog_78	tail terminator	connector
UHGV-1382728_38	eggNOG-mapper	1235792.C808_00090	NA	NA
UHGV-1382728_38	Structural annotation	PF20765	NA	NA
UHGV-1382728_39	PHROG	phrog_88	major tail protein	tail
UHGV-1382728_39	UniRef90	UniRef90_UPI001E4297AF	phage tail protein	NA
UHGV-1382728_39	eggNOG-mapper	1235792.C808_00091	phage major tail protein, phi13 family	NA
UHGV-1382728_39	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1382728_39	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1382728_40	PHROG	phrog_709	NA	unknown function
UHGV-1382728_40	eggNOG-mapper	1235792.C808_00092	NA	NA
UHGV-1382728_40	Structural annotation	PF11836	NA	NA
UHGV-1382728_41	PHROG	phrog_3033	NA	unknown function
UHGV-1382728_41	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-1382728_41	eggNOG-mapper	908340.HMPREF9406_0174	NA	NA
UHGV-1382728_42	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-1382728_42	UniRef90	UniRef90_UPI001E49D9C1	phage tail tape measure protein	NA
UHGV-1382728_42	eggNOG-mapper	1235792.C808_00093	Phage-related minor tail protein	NA
UHGV-1382728_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1382728_42	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1382728_42	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1382728_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1382728_43	UniRef90	UniRef90_UPI00148B3121	phage tail family protein	NA
UHGV-1382728_43	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-1382728_43	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1382728_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-1382728_43	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-1382728_44	PHROG	phrog_9886	NA	unknown function
UHGV-1382728_44	UniRef90	UniRef90_UPI001E61F555	phage tail protein	NA
UHGV-1382728_44	eggNOG-mapper	1235792.C808_00095	Prophage endopeptidase tail	NA
UHGV-1382728_44	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1382728_44	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1382728_44	COG	COG4926	Phage-related protein	NA
UHGV-1382728_44	Structural annotation	PF06605, PF15425, PF03944, PF21683, MF_00813, TIGR01665, NF033675, NF038128, COG4926	NA	NA
UHGV-1382728_47	eggNOG-mapper	1123075.AUDP01000020_gene1527	NA	NA
UHGV-1382728_48	PHROG	phrog_17147	NA	unknown function
UHGV-1382728_48	eggNOG-mapper	657322.FPR_27150	NA	NA
UHGV-1382728_49	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1382728_49	UniRef90	UniRef90_UPI001E2E8FBA	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1382728_49	eggNOG-mapper	657322.FPR_27160	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1382728_49	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1382728_49	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-1382728_50	PHROG	phrog_1348	tail fiber protein	tail
UHGV-1382728_50	UniRef90	UniRef90_UPI001C0F60E0	acyl carrier protein	NA
UHGV-1382728_50	eggNOG-mapper	411902.CLOBOL_05646	NA	NA
UHGV-1382728_50	Structural annotation	PF14301	NA	NA
UHGV-1382728_51	PHROG	phrog_20274	NA	unknown function
UHGV-1382728_51	UniRef90	UniRef90_UPI001E5F1113	putative ABC transporter permease	NA
UHGV-1382728_51	eggNOG-mapper	642492.Clole_2737	NA	NA
UHGV-1382728_51	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-1382728_51	COG	COG4905	NA	NA
UHGV-1382728_51	Structural annotation	PF06541, COG4905	NA	NA
UHGV-1382728_52	eggNOG-mapper	457412.RSAG_04673	NA	NA
UHGV-1382728_53	eggNOG-mapper	537007.BLAHAN_05249	NA	NA
UHGV-1382728_54	eggNOG-mapper	1321784.HMPREF1987_01091	NA	NA
UHGV-1382728_56	PHROG	phrog_297	holin	lysis
UHGV-1382728_56	UniRef90	UniRef90_R6K4G9	Glycosyl hydrolase family 25	NA
UHGV-1382728_56	eggNOG-mapper	411470.RUMGNA_00255	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-1382728_56	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-1382728_56	COG	COG1388	LysM repeat	NA
UHGV-1382728_56	Structural annotation	PF08230, PF19087	NA	NA