UHGV-1382784

Genome information

Genome length 42,942 bps

CDS count 54

Completeness 100.00% (complete)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-1382784
vOTU ID	vOTU-006823
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0284316
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.3
Jumbo phage	No

Genome content
Genome length	42,942 bps
GC content	50.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	93.46%
Average CDS length	744.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1382784_6	PHROG	phrog_19280	NA	unknown function
UHGV-1382784_6	eggNOG-mapper	1321778.HMPREF1982_03560	NA	NA
UHGV-1382784_6	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1382784_6	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1382784_8	PHROG	phrog_22978	NA	unknown function
UHGV-1382784_8	eggNOG-mapper	1410650.JHWL01000003_gene2814	NA	NA
UHGV-1382784_8	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-1382784_8	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-1382784_9	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-1382784_9	Structural annotation	PF01471, TIGR02869	NA	NA
UHGV-1382784_11	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1382784_11	eggNOG-mapper	718252.FP2_29250	NA	NA
UHGV-1382784_11	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-1382784_12	PHROG	phrog_12105	NA	unknown function
UHGV-1382784_12	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-1382784_14	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1382784_14	UniRef90	UniRef90_A0A358AS35	N4-gp56 family major capsid protein	NA
UHGV-1382784_14	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-1382784_14	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1382784_14	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1382784_15	PHROG	phrog_13908	NA	unknown function
UHGV-1382784_15	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-1382784_16	KOfam	K07584	NA	NA
UHGV-1382784_16	PHROG	phrog_4478	peptidase	other
UHGV-1382784_16	UniRef90	UniRef90_A0A416JW56	Ribosomal-processing cysteine protease Prp	NA
UHGV-1382784_16	eggNOG-mapper	411470.RUMGNA_03236	Cysteine protease Prp	NA
UHGV-1382784_16	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-1382784_16	COG	COG2868	NA	NA
UHGV-1382784_16	Structural annotation	PF04327, NF011125, COG2868	NA	NA
UHGV-1382784_17	PHROG	phrog_156	portal protein	head and packaging
UHGV-1382784_17	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-1382784_17	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-1382784_17	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-1382784_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1382784_18	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1382784_18	UniRef90	UniRef90_A0A416JVL2	Terminase-like family protein	NA
UHGV-1382784_18	eggNOG-mapper	748224.HMPREF9436_02548	Terminase-like family	NA
UHGV-1382784_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1382784_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-1382784_18	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1382784_19	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1382784_19	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1382784_19	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-1382784_19	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-1382784_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1382784_19	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1382784_19	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1382784_21	PHROG	phrog_16123	NA	unknown function
UHGV-1382784_21	eggNOG-mapper	1273103.NM10_00919	NA	NA
UHGV-1382784_22	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-1382784_23	UniRef90	UniRef90_A0A1Y3RJS2	Sigma70_r4_2 domain-containing protein	NA
UHGV-1382784_26	KOfam	K14059	int; integrase	NA
UHGV-1382784_26	PHROG	phrog_1	integrase	integration and excision
UHGV-1382784_26	UniRef90	UniRef90_UPI001C0F402D	site-specific integrase	NA
UHGV-1382784_26	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-1382784_26	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1382784_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1382784_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1382784_26	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1382784_27	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1382784_27	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-1382784_28	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1382784_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1382784_28	UniRef90	UniRef90_R6ILS1	HTH cro/C1-type domain-containing protein	NA
UHGV-1382784_28	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-1382784_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1382784_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1382784_29	UniRef90	UniRef90_UPI000E31DAF9	helix-turn-helix domain-containing protein	NA
UHGV-1382784_29	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-1382784_29	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1382784_31	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1382784_35	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1382784_35	UniRef90	UniRef90_A0A1Y4W4B5	YqaJ domain-containing protein	NA
UHGV-1382784_35	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-1382784_35	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1382784_35	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1382784_35	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1382784_35	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1382784_36	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1382784_36	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1382784_36	UniRef90	UniRef90_UPI0018C50A8E	recombinase RecT	NA
UHGV-1382784_36	eggNOG-mapper	272626.lin2413	Recombinational DNA repair protein (RecE pathway)	NA
UHGV-1382784_36	Pfam	PF03837	RecT family	RecT
UHGV-1382784_36	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1382784_36	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1382784_36	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-1382784_37	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1382784_37	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1382784_37	UniRef90	UniRef90_A0A2V2FMD6	Single-stranded DNA-binding protein	NA
UHGV-1382784_37	eggNOG-mapper	1485543.JMME01000005_gene988	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1382784_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1382784_37	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1382784_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1382784_37	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1382784_37	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1382784_38	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1382784_38	UniRef90	UniRef90_UPI00164BB1D1	transcriptional regulator	NA
UHGV-1382784_38	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-1382784_38	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1382784_38	Structural annotation	PF01475, TIGR01610, COG0735	NA	NA
UHGV-1382784_40	PHROG	phrog_824	NA	unknown function
UHGV-1382784_40	UniRef90	UniRef90_A0A6N8GXS9	VRR-NUC domain-containing protein	NA
UHGV-1382784_40	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-1382784_40	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1382784_43	PHROG	phrog_60	NA	unknown function
UHGV-1382784_43	UniRef90	UniRef90_A0A417H740	NA	NA
UHGV-1382784_43	Pfam	PF04448	NA	DUF551
UHGV-1382784_43	Structural annotation	NF041588	NA	NA
UHGV-1382784_45	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-1382784_45	Structural annotation	NF040595	NA	NA
UHGV-1382784_46	PHROG	phrog_6721	NA	unknown function
UHGV-1382784_46	eggNOG-mapper	428125.CLOLEP_01387	NA	NA
UHGV-1382784_46	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-1382784_47	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1382784_47	UniRef90	UniRef90_A0A7C6P5S1	RNA polymerase subunit sigma-24	NA
UHGV-1382784_47	eggNOG-mapper	1121335.Clst_0383	NA	NA
UHGV-1382784_47	Structural annotation	PF02996	NA	NA
UHGV-1382784_49	eggNOG-mapper	394503.Ccel_1297	NA	NA
UHGV-1382784_50	eggNOG-mapper	552396.HMPREF0863_01650	NA	NA
UHGV-1382784_51	KOfam	K19303	mepH; murein DD-endopeptidase [EC:3.4.-.-]	NA
UHGV-1382784_51	PHROG	phrog_329	minor tail protein	tail
UHGV-1382784_51	UniRef90	UniRef90_A0A2V2EEK9	NlpC/P60 domain-containing protein	NA
UHGV-1382784_51	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1382784_51	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-1382784_51	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1382784_51	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA