UHGV-1382842

Genome information

vOTU vOTU-021981

Genome length 36,138 bps

CDS count 64

Completeness 86.99% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-1382842
vOTU ID	vOTU-021981
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0246286
BioSample	NA
Country	Russia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.08
Jumbo phage	No

Genome content
Genome length	36,138 bps
GC content	41.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	89.11%
Average CDS length	506.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1382842_2	PHROG	phrog_3896	NA	unknown function
UHGV-1382842_3	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1382842_3	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-1382842_3	UniRef90	UniRef90_UPI0009FB6964	ORF6C domain-containing protein	NA
UHGV-1382842_3	eggNOG-mapper	658655.HMPREF0988_02543	Phage regulatory protein	NA
UHGV-1382842_3	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1382842_3	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-1382842_3	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-1382842_3	Structural annotation	PF10552, PF08346, NF008573, COG3561	NA	NA
UHGV-1382842_5	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1382842_5	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1382842_5	UniRef90	UniRef90_A0A6N3GKE0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1382842_5	eggNOG-mapper	610130.Closa_0743	Clp protease	NA
UHGV-1382842_5	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1382842_5	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1382842_5	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1382842_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-1382842_6	UniRef90	UniRef90_A0A4R3JAF4	HK97 family phage major capsid protein	NA
UHGV-1382842_6	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-1382842_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1382842_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1382842_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1382842_6	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1382842_7	PHROG	phrog_749	NA	unknown function
UHGV-1382842_7	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-1382842_8	PHROG	phrog_19734	NA	unknown function
UHGV-1382842_8	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-1382842_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1382842_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1382842_9	UniRef90	UniRef90_A0A4R3JAK0	Bacteriophage HK97-gp10 putative tail-component	NA
UHGV-1382842_9	eggNOG-mapper	411473.RUMCAL_01154	NA	NA
UHGV-1382842_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1382842_9	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1382842_10	PHROG	phrog_78	tail terminator	connector
UHGV-1382842_10	eggNOG-mapper	483218.BACPEC_01313	NA	NA
UHGV-1382842_10	Structural annotation	PF20765	NA	NA
UHGV-1382842_11	PHROG	phrog_88	major tail protein	tail
UHGV-1382842_11	UniRef90	UniRef90_A0A2N5NUL1	Phage tail protein	NA
UHGV-1382842_11	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-1382842_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1382842_12	PHROG	phrog_709	NA	unknown function
UHGV-1382842_12	eggNOG-mapper	879305.HMPREF9290_0132	NA	NA
UHGV-1382842_12	Structural annotation	PF11836	NA	NA
UHGV-1382842_13	PHROG	phrog_3033	NA	unknown function
UHGV-1382842_13	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-1382842_13	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-1382842_14	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1382842_14	UniRef90	UniRef90_R5TQ69	PhageMin_Tail domain-containing protein	NA
UHGV-1382842_14	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-1382842_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1382842_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1382842_14	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1382842_14	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-1382842_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1382842_15	UniRef90	UniRef90_UPI000E2F9A85	phage tail family protein	NA
UHGV-1382842_15	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-1382842_15	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1382842_15	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1382842_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-1382842_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1382842_16	PHROG	phrog_13289	tail protein	tail
UHGV-1382842_16	UniRef90	UniRef90_A0A412C574	Prophage_tail domain-containing protein	NA
UHGV-1382842_16	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-1382842_16	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1382842_16	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1382842_16	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-1382842_16	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1382842_17	PHROG	phrog_14030	NA	unknown function
UHGV-1382842_17	UniRef90	UniRef90_A0A6N3GLP8	Phage_lysozyme2 domain-containing protein	NA
UHGV-1382842_17	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-1382842_17	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1382842_17	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1382842_17	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-1382842_18	PHROG	phrog_21765	NA	unknown function
UHGV-1382842_18	UniRef90	UniRef90_UPI000E4B80F2	collagen-like protein	NA
UHGV-1382842_18	eggNOG-mapper	97139.C824_05954	NA	NA
UHGV-1382842_19	PHROG	phrog_16164	NA	unknown function
UHGV-1382842_19	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-1382842_19	Structural annotation	PF10651, TIGR02657	NA	NA
UHGV-1382842_20	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-1382842_20	Structural annotation	PF09136	NA	NA
UHGV-1382842_22	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-1382842_22	PHROG	phrog_819	tail protein	tail
UHGV-1382842_22	UniRef90	UniRef90_R5UG71	Collagen triple helix repeat protein	NA
UHGV-1382842_22	eggNOG-mapper	428127.EUBDOL_01210	self proteolysis	NA
UHGV-1382842_22	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1382842_22	COG	COG3209	NA	NA
UHGV-1382842_23	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-1382842_23	Structural annotation	PF08931	NA	NA
UHGV-1382842_24	PHROG	phrog_1863	NA	unknown function
UHGV-1382842_24	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-1382842_25	PHROG	phrog_1129	holin	lysis
UHGV-1382842_25	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-1382842_25	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-1382842_25	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1382842_25	Structural annotation	PF16079	NA	NA
UHGV-1382842_26	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-1382842_26	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1382842_26	UniRef90	UniRef90_A0A2N5NUK7	Toxin HicA	NA
UHGV-1382842_26	eggNOG-mapper	1410632.JHWW01000004_gene1545	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-1382842_26	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-1382842_26	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-1382842_26	Structural annotation	PF07927, COG1724	NA	NA
UHGV-1382842_27	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-1382842_27	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-1382842_27	UniRef90	UniRef90_A0A2N5NUI7	HicB family protein	NA
UHGV-1382842_27	eggNOG-mapper	97139.C824_05961	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-1382842_27	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-1382842_27	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-1382842_27	Structural annotation	PF15919, COG1598	NA	NA
UHGV-1382842_28	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1382842_28	PHROG	phrog_833	endolysin	lysis
UHGV-1382842_28	UniRef90	UniRef90_A0A2N5Q1W5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-1382842_28	eggNOG-mapper	1232453.BAIF02000059_gene1616	Ami_2	NA
UHGV-1382842_28	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1382842_28	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1382842_28	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1382842_29	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1382842_29	PHROG	phrog_95	integrase	integration and excision
UHGV-1382842_29	UniRef90	UniRef90_R5TPY9	Resolvase N-terminal domain protein	NA
UHGV-1382842_29	eggNOG-mapper	97139.C824_05947	Resolvase, N terminal domain	NA
UHGV-1382842_29	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1382842_29	Pfam	PF07508	Recombinase	Recombinase
UHGV-1382842_29	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1382842_29	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1382842_29	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1382842_30	UniRef90	UniRef90_A0A1C5W1A8	PBECR3 domain-containing protein	NA
UHGV-1382842_30	eggNOG-mapper	748727.CLJU_c39230	NA	NA
UHGV-1382842_30	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-1382842_30	Structural annotation	PF18812, TIGR00053, COG2929	NA	NA
UHGV-1382842_31	PHROG	phrog_3989	NA	unknown function
UHGV-1382842_31	UniRef90	UniRef90_A0A829NXH1	BRCT domain-containing protein	NA
UHGV-1382842_31	eggNOG-mapper	755731.Clo1100_2167	twin BRCT domain	NA
UHGV-1382842_31	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-1382842_31	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-1382842_31	Structural annotation	PF00533, NF004844	NA	NA
UHGV-1382842_32	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1382842_32	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1382842_32	UniRef90	UniRef90_A0A1C5X479	LexA repressor	NA
UHGV-1382842_32	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1382842_32	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1382842_32	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1382842_32	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1382842_32	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-1382842_33	UniRef90	UniRef90_A0A2N5NUM8	DNA-binding protein	NA
UHGV-1382842_33	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-1382842_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1382842_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1382842_33	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1382842_36	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-1382842_36	UniRef90	UniRef90_R6NXT3	HTH cro/C1-type domain-containing protein	NA
UHGV-1382842_36	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-1382842_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1382842_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1382842_36	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1382842_37	UniRef90	UniRef90_A0A894KEH6	Alcohol dehydrogenase	NA
UHGV-1382842_39	Structural annotation	NF037954	NA	NA
UHGV-1382842_40	COG	COG3617	Prophage antirepressor	NA
UHGV-1382842_41	PHROG	phrog_16447	NA	unknown function
UHGV-1382842_41	UniRef90	UniRef90_A0A8E3SN40	NA	NA
UHGV-1382842_41	eggNOG-mapper	1403390.U3PDZ3_9CAUD	NA	NA
UHGV-1382842_41	Pfam	PF10083	NA	DUF2321
UHGV-1382842_41	Structural annotation	PF10083, COG4306	NA	NA
UHGV-1382842_42	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1382842_42	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-1382842_42	UniRef90	UniRef90_UPI0015713293	phage antirepressor KilAC domain-containing protein	NA
UHGV-1382842_42	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-1382842_42	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1382842_42	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1382842_42	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1382842_42	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1382842_46	PHROG	phrog_7964	NA	unknown function
UHGV-1382842_46	UniRef90	UniRef90_A0A174CB23	Predicted acyltransferase	NA
UHGV-1382842_46	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-1382842_46	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-1382842_46	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1382842_46	Structural annotation	NF040481	NA	NA
UHGV-1382842_49	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1382842_49	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-1382842_49	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-1382842_49	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1382842_49	Structural annotation	PF05565	NA	NA
UHGV-1382842_50	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1382842_50	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-1382842_50	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-1382842_50	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-1382842_51	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-1382842_51	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1382842_52	PHROG	phrog_7566	NA	unknown function
UHGV-1382842_52	UniRef90	UniRef90_A0A2N5NVH0	Phosphoenolpyruvate carboxykinase	NA
UHGV-1382842_53	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1382842_53	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1382842_53	UniRef90	UniRef90_A7B3R6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1382842_53	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-1382842_53	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1382842_53	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1382842_53	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1382842_54	PHROG	phrog_1163	NA	unknown function
UHGV-1382842_54	UniRef90	UniRef90_A0A415S878	Replication protein	NA
UHGV-1382842_54	eggNOG-mapper	1042163.BRLA_c031420	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-1382842_54	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1382842_54	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-1382842_54	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1382842_54	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-1382842_54	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-1382842_55	PHROG	phrog_25488	NA	unknown function
UHGV-1382842_55	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-1382842_58	PHROG	phrog_10714	NA	unknown function
UHGV-1382842_58	UniRef90	UniRef90_R6RDV7	DNA polymerase II large subunit	NA
UHGV-1382842_58	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-1382842_59	UniRef90	UniRef90_UPI001186151F	Lar family restriction alleviation protein	NA
UHGV-1382842_60	PHROG	phrog_8684	NA	unknown function
UHGV-1382842_60	UniRef90	UniRef90_F7K050	YopX domain-containing protein	NA
UHGV-1382842_60	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-1382842_60	Pfam	PF09643	YopX protein	YopX
UHGV-1382842_60	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1382842_60	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1382842_61	Structural annotation	PF02895	NA	NA