UHGV-1383069

Genome information

vOTU vOTU-021929

Genome length 41,040 bps

CDS count 68

Completeness 71.17% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-1383069
vOTU ID	vOTU-021929
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0274013
BioSample	SAMN05194733
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.84
Jumbo phage	No

Genome content
Genome length	41,040 bps
GC content	40.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	93.29%
Average CDS length	566.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1383069_1	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1383069_1	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-1383069_1	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-1383069_1	COG	COG5410	NA	NA
UHGV-1383069_1	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1383069_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1383069_2	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-1383069_2	eggNOG-mapper	1121289.JHVL01000007_gene2767	sigma factor activity	NA
UHGV-1383069_2	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1383069_2	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1383069_3	PHROG	phrog_64	portal protein	head and packaging
UHGV-1383069_3	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-1383069_3	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1383069_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1383069_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1383069_4	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-1383069_5	PHROG	phrog_909	major head protein	head and packaging
UHGV-1383069_5	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-1383069_6	PHROG	phrog_29	major head protein	head and packaging
UHGV-1383069_6	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-1383069_6	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-1383069_6	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1383069_6	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1383069_7	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-1383069_7	Structural annotation	PF21169	NA	NA
UHGV-1383069_8	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-1383069_9	PHROG	phrog_1048	NA	unknown function
UHGV-1383069_9	UniRef90	UniRef90_A0A352P8A0	NA	NA
UHGV-1383069_9	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-1383069_9	Pfam	PF11195	NA	DUF2829
UHGV-1383069_9	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-1383069_9	Structural annotation	PF11195	NA	NA
UHGV-1383069_10	PHROG	phrog_4105	NA	unknown function
UHGV-1383069_10	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-1383069_11	PHROG	phrog_443	holin	lysis
UHGV-1383069_11	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-1383069_11	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-1383069_11	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1383069_11	Structural annotation	PF16945	NA	NA
UHGV-1383069_12	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1383069_13	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-1383069_13	AcrCatalog	cluster_24841	NA	NA
UHGV-1383069_14	Structural annotation	PF05657	NA	NA
UHGV-1383069_15	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-1383069_15	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-1383069_18	PHROG	phrog_14030	NA	unknown function
UHGV-1383069_18	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-1383069_18	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1383069_18	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-1383069_19	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1383069_19	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-1383069_19	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-1383069_19	COG	COG1511	NA	NA
UHGV-1383069_19	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-1383069_20	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-1383069_20	eggNOG-mapper	1410624.JNKK01000088_gene2110	Bacterial Ig-like domain (group 2)	NA
UHGV-1383069_20	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-1383069_21	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1383069_21	UniRef90	UniRef90_A0A1I0BKG6	BRO family, N-terminal domain	NA
UHGV-1383069_21	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-1383069_21	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1383069_21	COG	COG3617	Prophage antirepressor	NA
UHGV-1383069_21	Structural annotation	PF02498, COG3617	NA	NA
UHGV-1383069_22	PHROG	phrog_1194	NA	unknown function
UHGV-1383069_22	Pfam	PF20458	NA	DUF6711
UHGV-1383069_22	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1383069_23	PHROG	phrog_18190	NA	unknown function
UHGV-1383069_23	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-1383069_23	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-1383069_23	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1383069_23	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1383069_24	PHROG	phrog_17196	kinase	other
UHGV-1383069_24	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-1383069_24	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-1383069_25	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1383069_25	Structural annotation	PF02839	NA	NA
UHGV-1383069_27	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-1383069_28	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1383069_28	Structural annotation	NF040910	NA	NA
UHGV-1383069_30	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-1383069_30	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1383069_30	UniRef90	UniRef90_A0A173RCH7	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-1383069_30	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-1383069_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1383069_30	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1383069_30	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-1383069_31	PHROG	phrog_32192	NA	unknown function
UHGV-1383069_31	UniRef90	UniRef90_UPI001D0221FF	alanine-zipper protein	NA
UHGV-1383069_36	PHROG	phrog_26861	NA	unknown function
UHGV-1383069_36	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-1383069_36	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-1383069_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1383069_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1383069_36	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-1383069_38	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1383069_38	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1383069_38	UniRef90	UniRef90_A0A174JMG0	Chromosome segregation protein	NA
UHGV-1383069_38	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-1383069_38	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1383069_38	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1383069_39	PHROG	phrog_19610	NA	unknown function
UHGV-1383069_41	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-1383069_43	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1383069_43	UniRef90	UniRef90_UPI00189B4EB8	recombinase RecT	NA
UHGV-1383069_43	eggNOG-mapper	658655.HMPREF0988_00886	NA	NA
UHGV-1383069_43	Pfam	PF03837	RecT family	RecT
UHGV-1383069_43	Structural annotation	NF007351, COG3723	NA	NA
UHGV-1383069_44	PHROG	phrog_25456	NA	unknown function
UHGV-1383069_46	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1383069_46	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1383069_46	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-1383069_46	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-1383069_46	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1383069_46	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1383069_46	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1383069_48	PHROG	phrog_19106	NA	unknown function
UHGV-1383069_48	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-1383069_48	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-1383069_48	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-1383069_48	Structural annotation	TIGR01453	NA	NA
UHGV-1383069_52	Structural annotation	PF17388	NA	NA
UHGV-1383069_53	PHROG	phrog_11769	NA	unknown function
UHGV-1383069_53	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-1383069_53	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-1383069_53	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1383069_53	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1383069_53	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-1383069_54	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1383069_54	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1383069_54	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-1383069_54	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-1383069_54	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-1383069_54	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1383069_54	COG	COG0305	Replicative DNA helicase	NA
UHGV-1383069_54	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1383069_58	PHROG	phrog_21026	NA	unknown function
UHGV-1383069_61	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-1383069_63	PHROG	phrog_8684	NA	unknown function
UHGV-1383069_63	UniRef90	UniRef90_A0A173RDP8	YopX protein	NA
UHGV-1383069_63	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-1383069_63	Pfam	PF09643	YopX protein	YopX
UHGV-1383069_63	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1383069_63	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1383069_64	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-1383069_66	PHROG	phrog_20593	NA	unknown function
UHGV-1383069_67	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1383069_67	UniRef90	UniRef90_A0A173RDU7	HNH endonuclease	NA
UHGV-1383069_67	eggNOG-mapper	1235799.C818_02668	endonuclease activity	NA
UHGV-1383069_67	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1383069_67	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1383069_67	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-1383069_68	PHROG	phrog_874	NA	unknown function
UHGV-1383069_68	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-1383069_68	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA