UHGV-1383472

Genome information

Genome length 23,252 bps

CDS count 33

Completeness 62.62% (medium-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-1383472
vOTU ID	vOTU-034035
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0170383
BioSample	SAMN02333939
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.62% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.44
Jumbo phage	No

Genome content
Genome length	23,252 bps
GC content	36.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	92.89%
Average CDS length	657.18 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1383472_1	PHROG	phrog_22292	NA	unknown function
UHGV-1383472_1	eggNOG-mapper	1336234.JAGN01000004_gene538	NA	NA
UHGV-1383472_4	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1383472_4	Pfam	PF07374	NA	DUF1492
UHGV-1383472_4	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1383472_4	Structural annotation	PF08281, MF_00674, NF007227, COG1191	NA	NA
UHGV-1383472_5	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1383472_5	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1383472_5	UniRef90	UniRef90_E2NR91	Terminase small subunit	NA
UHGV-1383472_5	eggNOG-mapper	1504823.CCMM01000008_gene1049	DNA packaging	NA
UHGV-1383472_5	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1383472_5	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1383472_5	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1383472_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1383472_6	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1383472_6	UniRef90	UniRef90_A0A417IN81	PBSX family phage terminase large subunit	NA
UHGV-1383472_6	eggNOG-mapper	1504823.CCMM01000008_gene1048	DNA packaging	NA
UHGV-1383472_6	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1383472_6	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1383472_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1383472_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-1383472_6	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1383472_7	PHROG	phrog_64	portal protein	head and packaging
UHGV-1383472_7	UniRef90	UniRef90_A0A417IN69	Phage portal protein	NA
UHGV-1383472_7	eggNOG-mapper	1504823.CCMM01000008_gene1047	Phage portal protein, SPP1 family	NA
UHGV-1383472_7	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1383472_7	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1383472_7	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1383472_8	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1383472_8	UniRef90	UniRef90_A0A1C5T9G1	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-1383472_8	eggNOG-mapper	1504823.CCMM01000008_gene1046	cell adhesion	NA
UHGV-1383472_8	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1383472_8	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-1383472_8	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1383472_8	COG	COG2369	NA	NA
UHGV-1383472_8	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1383472_10	PHROG	phrog_3675	NA	unknown function
UHGV-1383472_10	UniRef90	UniRef90_A0A0E4H649	YjcQ protein	NA
UHGV-1383472_10	eggNOG-mapper	1120978.KB894082_gene1061	YjcQ protein	NA
UHGV-1383472_10	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-1383472_10	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-1383472_11	PHROG	phrog_30609	NA	unknown function
UHGV-1383472_11	Structural annotation	PF21485	NA	NA
UHGV-1383472_13	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1383472_13	UniRef90	UniRef90_A0A417IN83	NA	NA
UHGV-1383472_13	eggNOG-mapper	1504823.CCMM01000008_gene1042	NA	NA
UHGV-1383472_13	Pfam	PF14265	NA	DUF4355
UHGV-1383472_13	Structural annotation	PF14265	NA	NA
UHGV-1383472_14	PHROG	phrog_267	major head protein	head and packaging
UHGV-1383472_14	UniRef90	UniRef90_A0A417IN35	P22 coat protein-protein 5 domain protein	NA
UHGV-1383472_14	eggNOG-mapper	1504823.CCMM01000008_gene1041	P22 coat protein-protein 5 domain protein	NA
UHGV-1383472_14	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1383472_15	PHROG	phrog_3281	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-1383472_15	UniRef90	UniRef90_A0A1C5TAF6	Rho termination factor, N-terminal domain	NA
UHGV-1383472_15	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-1383472_15	Structural annotation	PF07498	NA	NA
UHGV-1383472_16	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1383472_16	UniRef90	UniRef90_A0A1C6BLH2	Phage gp6-like head-tail connector protein	NA
UHGV-1383472_16	eggNOG-mapper	1504823.CCMM01000008_gene1039	NA	NA
UHGV-1383472_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1383472_16	Structural annotation	PF05135	NA	NA
UHGV-1383472_17	PHROG	phrog_2168	NA	unknown function
UHGV-1383472_17	eggNOG-mapper	1211844.CBLM010000016_gene1488	NA	NA
UHGV-1383472_17	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-1383472_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1383472_18	UniRef90	UniRef90_A0A1C5TVK4	Phage protein, HK97 gp10 family	NA
UHGV-1383472_18	eggNOG-mapper	1504823.CCMM01000008_gene1037	NA	NA
UHGV-1383472_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1383472_18	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1383472_18	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1383472_19	PHROG	phrog_78	tail terminator	connector
UHGV-1383472_19	eggNOG-mapper	1504823.CCMM01000008_gene1036	NA	NA
UHGV-1383472_19	Structural annotation	PF05657	NA	NA
UHGV-1383472_20	PHROG	phrog_158	major tail protein	tail
UHGV-1383472_20	UniRef90	UniRef90_A0A1C5TB95	Phage tail protein	NA
UHGV-1383472_20	eggNOG-mapper	1504823.CCMM01000008_gene1035	Phage tail tube protein, TTP	NA
UHGV-1383472_20	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-1383472_20	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1383472_21	PHROG	phrog_183	tail chaperone protein	tail
UHGV-1383472_21	UniRef90	UniRef90_UPI000487273D	NA	NA
UHGV-1383472_21	eggNOG-mapper	1504823.CCMM01000008_gene1034	NA	NA
UHGV-1383472_21	Pfam	PF19591	NA	DUF6096
UHGV-1383472_21	Structural annotation	PF19591	NA	NA
UHGV-1383472_22	PHROG	phrog_2066	NA	unknown function
UHGV-1383472_22	eggNOG-mapper	1504823.CCMM01000008_gene1033	NA	NA
UHGV-1383472_23	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1383472_23	UniRef90	UniRef90_A0A1C5TVU6	Phage-related minor tail protein	NA
UHGV-1383472_23	eggNOG-mapper	1504823.CCMM01000008_gene1032	phage tail tape measure protein	NA
UHGV-1383472_23	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1383472_23	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1383472_24	PHROG	phrog_1194	NA	unknown function
UHGV-1383472_24	eggNOG-mapper	1504823.CCMM01000008_gene1031	NA	NA
UHGV-1383472_24	Pfam	PF20458	NA	DUF6711
UHGV-1383472_24	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1383472_25	PHROG	phrog_15074	NA	unknown function
UHGV-1383472_25	eggNOG-mapper	445974.CLORAM_02919	cellulase activity	NA
UHGV-1383472_25	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-1383472_25	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1383472_26	eggNOG-mapper	1504823.CCMM01000008_gene1029	NA	NA
UHGV-1383472_27	PHROG	phrog_18110	NA	unknown function
UHGV-1383472_27	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-1383472_27	COG	COG4926	Phage-related protein	NA
UHGV-1383472_28	PHROG	phrog_372	tail protein	tail
UHGV-1383472_28	UniRef90	UniRef90_UPI0006C32325	NA	NA
UHGV-1383472_28	eggNOG-mapper	1211844.CBLM010000016_gene1479	NA	NA
UHGV-1383472_28	Pfam	PF05895	NA	DUF859
UHGV-1383472_28	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-1383472_29	PHROG	phrog_199	holin	lysis
UHGV-1383472_29	UniRef90	UniRef90_E2NU60	Toxin secretion/phage lysis holin	NA
UHGV-1383472_29	eggNOG-mapper	742723.HMPREF9477_00889	Bacteriophage holin family	NA
UHGV-1383472_29	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1383472_29	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1383472_29	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1383472_29	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1383472_30	PHROG	phrog_774	NA	unknown function
UHGV-1383472_30	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-1383472_31	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1383472_31	PHROG	phrog_435	endolysin	lysis
UHGV-1383472_31	UniRef90	UniRef90_UPI001EE924D3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1383472_31	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-1383472_31	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1383472_31	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1383472_31	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-1383472_32	eggNOG-mapper	633147.Olsu_1237	NA	NA
UHGV-1383472_33	KOfam	K14059	int; integrase	NA
UHGV-1383472_33	PHROG	phrog_1	integrase	integration and excision
UHGV-1383472_33	UniRef90	UniRef90_A0A3E5GXH4	Site-specific integrase	NA
UHGV-1383472_33	eggNOG-mapper	1232453.BAIF02000014_gene3156	Phage integrase family	NA
UHGV-1383472_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1383472_33	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1383472_33	Structural annotation	PF00589, MF_02055, NF040815, COG4974	NA	NA