UHGV-1383491

Genome information

vOTU vOTU-019012

Genome length 36,124 bps

CDS count 44

Completeness 88.90% (medium-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-1383491
vOTU ID	vOTU-019012
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0246196
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.01
Jumbo phage	No

Genome content
Genome length	36,124 bps
GC content	33.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	94.05%
Average CDS length	773.73 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1383491_1	KOfam	K07273	acm; lysozyme	NA
UHGV-1383491_1	PHROG	phrog_326	tail protein with endopeptidase domain	other
UHGV-1383491_1	UniRef90	UniRef90_V6DL75	Phage lysin	NA
UHGV-1383491_1	eggNOG-mapper	1605.Lani381_0871	Prophage endopeptidase tail	NA
UHGV-1383491_1	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1383491_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1383491_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1383491_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1383491_1	Structural annotation	PF06605, PF01183, PF18994, TIGR01665, NF007404, COG3757, COG4926	NA	NA
UHGV-1383491_2	PHROG	phrog_30835	NA	unknown function
UHGV-1383491_2	UniRef90	UniRef90_V6DPB7	Holin-like protein, putative	NA
UHGV-1383491_2	eggNOG-mapper	1395513.P343_12610	Phage tail protein	NA
UHGV-1383491_2	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1383491_2	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1383491_3	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-1383491_3	UniRef90	UniRef90_A0A1V9REB6	TMP_3 domain-containing protein	NA
UHGV-1383491_3	eggNOG-mapper	52979.O03937_9CAUD	peptidoglycan catabolic process	NA
UHGV-1383491_3	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1383491_3	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1383491_3	Structural annotation	PF10145, TIGR01760, NF008096, COG5280	NA	NA
UHGV-1383491_4	PHROG	phrog_706	NA	unknown function
UHGV-1383491_4	UniRef90	UniRef90_V6DLF3	NA	NA
UHGV-1383491_4	eggNOG-mapper	52979.O03936_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-1383491_4	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1383491_4	Structural annotation	PF06854	NA	NA
UHGV-1383491_5	PHROG	phrog_10257	minor head protein	head and packaging
UHGV-1383491_5	eggNOG-mapper	1158601.I585_00688	NA	NA
UHGV-1383491_5	Structural annotation	PF10666	NA	NA
UHGV-1383491_6	PHROG	phrog_820	major tail protein	tail
UHGV-1383491_6	UniRef90	UniRef90_V6DL71	Minor capsid protein	NA
UHGV-1383491_6	eggNOG-mapper	1140001.I571_02115	domain, Protein	NA
UHGV-1383491_6	COG	COG5492	NA	NA
UHGV-1383491_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1383491_7	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1383491_7	UniRef90	UniRef90_V6DPB3	Minor capsid protein	NA
UHGV-1383491_7	eggNOG-mapper	1158601.I585_01152	Minor capsid protein from bacteriophage	NA
UHGV-1383491_7	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1383491_7	Structural annotation	PF12691	NA	NA
UHGV-1383491_8	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1383491_8	UniRef90	UniRef90_V6DL90	Minor capsid protein	NA
UHGV-1383491_8	eggNOG-mapper	52979.O03933_9CAUD	Minor capsid protein	NA
UHGV-1383491_8	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1383491_8	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1383491_9	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1383491_9	UniRef90	UniRef90_A0A317GI63	Capsid protein	NA
UHGV-1383491_9	eggNOG-mapper	1140001.I571_02112	Minor capsid protein	NA
UHGV-1383491_9	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1383491_9	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1383491_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1383491_10	UniRef90	UniRef90_A0A0B8QYX3	Coenzyme F420-reducing hydrogenase, beta subunit	NA
UHGV-1383491_10	eggNOG-mapper	1399941.U3PCQ2_9CAUD	NA	NA
UHGV-1383491_11	PHROG	phrog_422	major head protein	head and packaging
UHGV-1383491_11	UniRef90	UniRef90_A0A1V9TMB5	Capsid protein	NA
UHGV-1383491_11	eggNOG-mapper	1399941.U3PDP8_9CAUD	T=7 icosahedral viral capsid	NA
UHGV-1383491_11	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1383491_12	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1383491_12	UniRef90	UniRef90_UPI001F504DE4	phage scaffolding protein	NA
UHGV-1383491_12	eggNOG-mapper	272626.lin0108	Phage minor structural protein GP20	NA
UHGV-1383491_12	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1383491_12	Structural annotation	PF06810	NA	NA
UHGV-1383491_13	PHROG	phrog_1865	NA	unknown function
UHGV-1383491_14	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1383491_14	UniRef90	UniRef90_A0A1V9REA8	Ntox50 domain-containing protein	NA
UHGV-1383491_14	eggNOG-mapper	1140001.I571_02107	Phage minor capsid protein 2	NA
UHGV-1383491_14	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1383491_14	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-1383491_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-1383491_15	UniRef90	UniRef90_V6DN92	Minor capsid protein	NA
UHGV-1383491_15	eggNOG-mapper	1399941.U3PCP8_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1383491_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1383491_15	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1383491_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1383491_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1383491_16	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1383491_16	UniRef90	UniRef90_A0A2G4RJU8	PBSX family phage terminase large subunit	NA
UHGV-1383491_16	eggNOG-mapper	1158601.I585_00701	Terminase RNAseH like domain	NA
UHGV-1383491_16	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1383491_16	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1383491_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1383491_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-1383491_16	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1383491_17	PHROG	phrog_7344	terminase small subunit	head and packaging
UHGV-1383491_17	UniRef90	UniRef90_A0A848CEM0	Helix-turn-helix domain-containing protein	NA
UHGV-1383491_17	eggNOG-mapper	1423755.BAML01000009_gene780	NA	NA
UHGV-1383491_17	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-1383491_17	Structural annotation	PF13022	NA	NA
UHGV-1383491_18	PHROG	phrog_20177	NA	unknown function
UHGV-1383491_19	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-1383491_19	UniRef90	UniRef90_F7QUN1	Phage transcriptional regulator, ArpU family	NA
UHGV-1383491_19	eggNOG-mapper	1235801.C822_00132	Phage transcriptional regulator, ArpU family	NA
UHGV-1383491_19	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-1383491_19	Structural annotation	PF07374, TIGR01637	NA	NA
UHGV-1383491_21	PHROG	phrog_28363	NA	unknown function
UHGV-1383491_22	PHROG	phrog_36988	NA	unknown function
UHGV-1383491_22	UniRef90	UniRef90_A0A1D7TSQ1	HTH cro/C1-type domain-containing protein	NA
UHGV-1383491_22	Structural annotation	PF08667, MF_00535, NF010465, COG1396	NA	NA
UHGV-1383491_23	Structural annotation	PF07073	NA	NA
UHGV-1383491_27	PHROG	phrog_3745	NA	unknown function
UHGV-1383491_27	eggNOG-mapper	908339.HMPREF9265_1627	NA	NA
UHGV-1383491_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1383491_28	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1383491_28	UniRef90	UniRef90_A0A828C0A2	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1383491_28	eggNOG-mapper	294382.Q5YA86_9CAUD	magnesium ion binding	NA
UHGV-1383491_28	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1383491_28	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1383491_29	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1383491_29	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1383491_29	UniRef90	UniRef90_V6DL69	AAA domain-containing protein	NA
UHGV-1383491_29	eggNOG-mapper	1235801.C822_00124	Primase C terminal 2 (PriCT-2)	NA
UHGV-1383491_29	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1383491_29	Pfam	PF13481	AAA domain	AAA_25
UHGV-1383491_29	COG	COG3598	RecA-family ATPase	NA
UHGV-1383491_29	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-1383491_30	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-1383491_30	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1383491_30	UniRef90	UniRef90_A0A1V9R1D1	DEAD/DEAH box helicase	NA
UHGV-1383491_30	eggNOG-mapper	1235801.C822_00122	Helicase C-terminal domain protein	NA
UHGV-1383491_30	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1383491_30	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1383491_30	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1383491_30	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1383491_30	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-1383491_31	PHROG	phrog_1029	NA	unknown function
UHGV-1383491_31	eggNOG-mapper	1486428.A0A097BY87_9CAUD	NA	NA
UHGV-1383491_31	Structural annotation	PF10065, COG5532	NA	NA
UHGV-1383491_32	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-1383491_32	UniRef90	UniRef90_A0A1V9QJD1	Replication terminator protein	NA
UHGV-1383491_32	eggNOG-mapper	1158614.I592_02292	NA	NA
UHGV-1383491_33	PHROG	phrog_2698	NA	unknown function
UHGV-1383491_33	UniRef90	UniRef90_A0A0R2KFV1	NA	NA
UHGV-1383491_33	eggNOG-mapper	1235801.C822_00119	NA	NA
UHGV-1383491_33	Structural annotation	PF05037	NA	NA
UHGV-1383491_34	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1383491_34	UniRef90	UniRef90_UPI001CBAF530	ATP-binding protein	NA
UHGV-1383491_34	eggNOG-mapper	1235801.C822_00118	AAA domain	NA
UHGV-1383491_34	Pfam	PF13479	AAA domain	AAA_24
UHGV-1383491_34	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1383491_35	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1383491_35	PHROG	phrog_1499	NA	unknown function
UHGV-1383491_35	UniRef90	UniRef90_V6DP89	AAA_15 domain-containing protein	NA
UHGV-1383491_35	eggNOG-mapper	1140001.I571_01812	AAA domain	NA
UHGV-1383491_35	PADLOC	AAA_15	NA	NA
UHGV-1383491_35	Pfam	PF13476	AAA domain	AAA_23
UHGV-1383491_35	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1383491_35	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-1383491_39	UniRef90	UniRef90_A0A6B0ALJ0	BetR domain protein	NA
UHGV-1383491_39	eggNOG-mapper	511437.Lbuc_1554	NA	NA
UHGV-1383491_39	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-1383491_40	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1383491_40	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1383491_40	UniRef90	UniRef90_A0A1V9REA6	HTH cro/C1-type domain-containing protein	NA
UHGV-1383491_40	eggNOG-mapper	764562.D7RWL5_9CAUD	sequence-specific DNA binding	NA
UHGV-1383491_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1383491_40	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1383491_40	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1383491_41	PHROG	phrog_25280	NA	unknown function
UHGV-1383491_41	UniRef90	UniRef90_A0A1V9RDT1	TerB_N domain-containing protein	NA
UHGV-1383491_41	eggNOG-mapper	941824.TCEL_02254	TerB N-terminal domain	NA
UHGV-1383491_41	Pfam	PF13208	TerB N-terminal domain	TerB_N
UHGV-1383491_41	COG	COG4103	Tellurite resistance protein TerB	NA
UHGV-1383491_43	KOfam	K14059	int; integrase	NA
UHGV-1383491_43	PHROG	phrog_1	integrase	integration and excision
UHGV-1383491_43	UniRef90	UniRef90_UPI00137045BB	site-specific integrase	NA
UHGV-1383491_43	eggNOG-mapper	565664.EFXG_02689	Belongs to the 'phage' integrase family	NA
UHGV-1383491_43	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1383491_43	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1383491_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1383491_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1383491_43	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1383491_44	KOfam	K01610	E4.1.1.49, pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]	NA
UHGV-1383491_44	UniRef90	UniRef90_Q1WUY0	Phosphoenolpyruvate carboxykinase (ATP)	NA
UHGV-1383491_44	eggNOG-mapper	1122146.AUHP01000011_gene473	Phosphoenolpyruvate carboxykinase	NA
UHGV-1383491_44	Pfam	PF01293	Phosphoenolpyruvate carboxykinase	PEPCK_ATP
UHGV-1383491_44	COG	COG1866	Phosphoenolpyruvate carboxykinase, ATP-dependent	NA