UHGV-1383578

Genome information

Genome length 23,330 bps

CDS count 32

Completeness 61.76% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-1383578
vOTU ID	vOTU-034036
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0170948
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.28
Jumbo phage	No

Genome content
Genome length	23,330 bps
GC content	44.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	92.95%
Average CDS length	679.97 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1383578_2	PHROG	phrog_9607	NA	unknown function
UHGV-1383578_2	eggNOG-mapper	1378168.N510_03161	NA	NA
UHGV-1383578_2	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-1383578_3	Pfam	PF14099	Polysaccharide lyase	Polysacc_lyase
UHGV-1383578_5	UniRef90	UniRef90_UPI0013141798	ribbon-helix-helix protein, CopG family	NA
UHGV-1383578_5	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1383578_5	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-1383578_6	UniRef90	UniRef90_A0A5D4GB78	NA	NA
UHGV-1383578_6	eggNOG-mapper	761193.Runsl_0319	NA	NA
UHGV-1383578_6	Structural annotation	PF10651, PF14582, MF_02044, NF041754, COG5555, COG3470	NA	NA
UHGV-1383578_7	PHROG	phrog_19695	NA	unknown function
UHGV-1383578_7	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-1383578_7	Structural annotation	PF19714	NA	NA
UHGV-1383578_8	PHROG	phrog_24267	NA	unknown function
UHGV-1383578_8	UniRef90	UniRef90_R5HGH3	Phage minor structural protein	NA
UHGV-1383578_8	eggNOG-mapper	526218.Sterm_2930	NA	NA
UHGV-1383578_9	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-1383578_9	PHROG	phrog_14030	NA	unknown function
UHGV-1383578_9	UniRef90	UniRef90_UPI0013140944	phage tail tip lysozyme	NA
UHGV-1383578_9	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-1383578_9	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1383578_9	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-1383578_9	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1383578_9	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-1383578_10	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1383578_10	UniRef90	UniRef90_A0A373N0D4	Prophage_tail domain-containing protein	NA
UHGV-1383578_10	eggNOG-mapper	33035.JPJF01000023_gene3230	Phage minor structural protein	NA
UHGV-1383578_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1383578_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1383578_10	COG	COG4926	Phage-related protein	NA
UHGV-1383578_10	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1383578_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1383578_11	UniRef90	UniRef90_A0A844KEE5	Phage tail protein	NA
UHGV-1383578_11	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-1383578_11	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1383578_11	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1383578_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-1383578_11	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1383578_12	KOfam	K06675	SMC4; structural maintenance of chromosome 4	NA
UHGV-1383578_12	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1383578_12	UniRef90	UniRef90_A0A373N0I0	Phage tail tape measure protein	NA
UHGV-1383578_12	eggNOG-mapper	742740.HMPREF9474_01203	Phage tail tape measure protein, TP901 family	NA
UHGV-1383578_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1383578_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1383578_12	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1383578_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1383578_14	PHROG	phrog_88	major tail protein	tail
UHGV-1383578_14	UniRef90	UniRef90_A0A416ZS16	Phage tail protein	NA
UHGV-1383578_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1383578_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1383578_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1383578_15	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-1383578_15	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-1383578_16	PHROG	phrog_78	tail terminator	connector
UHGV-1383578_16	Structural annotation	PF05657	NA	NA
UHGV-1383578_17	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-1383578_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1383578_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1383578_18	PHROG	phrog_749	NA	unknown function
UHGV-1383578_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-1383578_19	UniRef90	UniRef90_A0A373N0L7	Phage major capsid protein	NA
UHGV-1383578_19	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-1383578_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1383578_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1383578_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1383578_19	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-1383578_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1383578_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1383578_20	UniRef90	UniRef90_A0A416ZS51	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1383578_20	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-1383578_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1383578_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1383578_20	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-1383578_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-1383578_21	UniRef90	UniRef90_A0A416ZRW1	Phage portal protein	NA
UHGV-1383578_21	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-1383578_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1383578_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1383578_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1383578_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1383578_22	UniRef90	UniRef90_A0A373MZZ0	Terminase large subunit	NA
UHGV-1383578_22	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-1383578_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1383578_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1383578_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1383578_22	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1383578_23	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-1383578_23	UniRef90	UniRef90_A0A371IJQ7	RNA polymerase subunit sigma-70	NA
UHGV-1383578_23	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-1383578_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1383578_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1383578_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1383578_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1383578_24	UniRef90	UniRef90_A0A373N028	HNH endonuclease	NA
UHGV-1383578_24	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-1383578_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1383578_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1383578_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1383578_25	UniRef90	UniRef90_A0A373MZQ3	NA	NA
UHGV-1383578_25	eggNOG-mapper	1235792.C808_03069	sigma factor activity	NA
UHGV-1383578_25	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1383578_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1383578_25	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-1383578_26	Structural annotation	PF10627	NA	NA
UHGV-1383578_28	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1383578_28	UniRef90	UniRef90_D7GWI5	NA	NA
UHGV-1383578_28	eggNOG-mapper	658655.HMPREF0988_02575	NA	NA
UHGV-1383578_29	Structural annotation	PF18350, MF_00369, COG2139	NA	NA
UHGV-1383578_31	Structural annotation	PF02796, NF040595	NA	NA
UHGV-1383578_32	PHROG	phrog_7566	NA	unknown function
UHGV-1383578_32	eggNOG-mapper	411459.RUMOBE_00948	NA	NA