UHGV-1383616

Genome information

Genome length 22,167 bps

CDS count 30

Completeness 62.61% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-1383616
vOTU ID	vOTU-034037
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0162589
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.71
Jumbo phage	No

Genome content
Genome length	22,167 bps
GC content	39.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	95.29%
Average CDS length	707.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1383616_1	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1383616_1	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1383616_1	UniRef90	UniRef90_A0A139R8P3	Phage replicative DNA helicase, repA	NA
UHGV-1383616_1	eggNOG-mapper	679192.HMPREF9013_1315	Primase C terminal 2 (PriCT-2)	NA
UHGV-1383616_1	COG	COG3598	RecA-family ATPase	NA
UHGV-1383616_1	Structural annotation	PF03796, PF16007, TIGR03880, COG3598	NA	NA
UHGV-1383616_2	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1383616_2	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1383616_2	UniRef90	UniRef90_UPI000CF950FC	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1383616_2	eggNOG-mapper	1140001.I571_01822	Endodeoxyribonuclease RusA	NA
UHGV-1383616_2	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1383616_2	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1383616_2	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1383616_4	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-1383616_4	UniRef90	UniRef90_A0A4D6BGB6	Putative DNA-directed RNA polymerase	NA
UHGV-1383616_4	eggNOG-mapper	536233.CLO_1806	NA	NA
UHGV-1383616_4	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-1383616_5	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1383616_5	UniRef90	UniRef90_A0A417Z675	HNH endonuclease	NA
UHGV-1383616_5	eggNOG-mapper	1282664.H354_06526	HNH endonuclease	NA
UHGV-1383616_5	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1383616_5	Structural annotation	PF13392	NA	NA
UHGV-1383616_6	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1383616_6	eggNOG-mapper	706433.HMPREF9430_01275	NA	NA
UHGV-1383616_6	Structural annotation	PF04545, MF_00674, TIGR01636, COG1191	NA	NA
UHGV-1383616_7	KOfam	K07403	nfeD; membrane-bound serine protease (ClpP class)	NA
UHGV-1383616_7	PHROG	phrog_11747	NA	unknown function
UHGV-1383616_7	UniRef90	UniRef90_A0A2V2GQ83	Serine protease	NA
UHGV-1383616_7	eggNOG-mapper	393480.FNP_2357	serine-type peptidase activity	NA
UHGV-1383616_7	Pfam	PF01972	Serine dehydrogenase proteinase	SDH_sah
UHGV-1383616_7	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-1383616_7	Structural annotation	PF01972, MF_00444, TIGR00706, COG0740	NA	NA
UHGV-1383616_9	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1383616_9	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1383616_9	UniRef90	UniRef90_UPI00138B0CFF	terminase small subunit	NA
UHGV-1383616_9	eggNOG-mapper	1123263.AUKY01000111_gene1092	DNA packaging	NA
UHGV-1383616_9	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1383616_9	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1383616_9	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1383616_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1383616_10	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1383616_10	UniRef90	UniRef90_D2MPJ1	Phage terminase, large subunit, PBSX family	NA
UHGV-1383616_10	eggNOG-mapper	1123263.AUKY01000111_gene1093	Phage terminase, large subunit, PBSX family	NA
UHGV-1383616_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-1383616_10	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1383616_11	PHROG	phrog_533	portal protein	head and packaging
UHGV-1383616_11	UniRef90	UniRef90_UPI001D011A41	capsid protein	NA
UHGV-1383616_11	eggNOG-mapper	1123263.AUKY01000111_gene1094	NA	NA
UHGV-1383616_11	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1383616_12	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1383616_12	UniRef90	UniRef90_UPI001D0157A8	phage minor capsid protein	NA
UHGV-1383616_12	eggNOG-mapper	679192.HMPREF9013_1305	Phage minor capsid protein 2	NA
UHGV-1383616_12	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1383616_12	Structural annotation	PF06152	NA	NA
UHGV-1383616_15	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1383616_15	eggNOG-mapper	1123263.AUKY01000051_gene1081	NA	NA
UHGV-1383616_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-1383616_16	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-1383616_16	eggNOG-mapper	1123263.AUKY01000051_gene1080	NA	NA
UHGV-1383616_16	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1383616_17	eggNOG-mapper	1123263.AUKY01000051_gene1079	NA	NA
UHGV-1383616_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1383616_18	eggNOG-mapper	1123263.AUKY01000051_gene1078	NA	NA
UHGV-1383616_19	PHROG	phrog_8710	NA	unknown function
UHGV-1383616_19	eggNOG-mapper	1123263.AUKY01000051_gene1077	NA	NA
UHGV-1383616_19	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1383616_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1383616_20	eggNOG-mapper	1123263.AUKY01000051_gene1076	NA	NA
UHGV-1383616_21	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-1383616_21	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-1383616_21	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-1383616_21	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1383616_21	Structural annotation	PF12691, COG5003	NA	NA
UHGV-1383616_22	PHROG	phrog_820	major tail protein	tail
UHGV-1383616_22	eggNOG-mapper	1123263.AUKY01000051_gene1074	NA	NA
UHGV-1383616_22	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1383616_23	PHROG	phrog_8300	NA	unknown function
UHGV-1383616_23	eggNOG-mapper	1123263.AUKY01000051_gene1073	NA	NA
UHGV-1383616_23	Structural annotation	PF06896	NA	NA
UHGV-1383616_24	PHROG	phrog_8355	NA	unknown function
UHGV-1383616_24	UniRef90	UniRef90_UPI001F170E6A	Gp15 family bacteriophage protein	NA
UHGV-1383616_24	eggNOG-mapper	1123263.AUKY01000051_gene1072	NA	NA
UHGV-1383616_24	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1383616_24	Structural annotation	PF06854	NA	NA
UHGV-1383616_25	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1383616_25	UniRef90	UniRef90_A0A1C5TVU6	Phage-related minor tail protein	NA
UHGV-1383616_25	eggNOG-mapper	1123263.AUKY01000051_gene1071	tape measure	NA
UHGV-1383616_25	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1383616_25	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1383616_26	PHROG	phrog_1194	NA	unknown function
UHGV-1383616_26	eggNOG-mapper	1123263.AUKY01000051_gene1070	NA	NA
UHGV-1383616_26	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1383616_27	PHROG	phrog_6616	tail protein	tail
UHGV-1383616_27	eggNOG-mapper	1123263.AUKY01000051_gene1069	cellulase activity	NA
UHGV-1383616_27	COG	COG4926	Phage-related protein	NA
UHGV-1383616_27	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-1383616_28	PHROG	phrog_372	tail protein	tail
UHGV-1383616_28	eggNOG-mapper	1399942.U3PFX4_9CAUD	peptidoglycan catabolic process	NA
UHGV-1383616_29	eggNOG-mapper	411467.BACCAP_00281	NA	NA
UHGV-1383616_29	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12