UHGV-1384234

Genome information

Genome length 36,179 bps

CDS count 58

Completeness 99.90% (high-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-1384234
vOTU ID	vOTU-012662
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0246541
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.81
Jumbo phage	No

Genome content
Genome length	36,179 bps
GC content	54.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	89.48%
Average CDS length	562.55 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1384234_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1384234_1	PHROG	phrog_95	integrase	integration and excision
UHGV-1384234_1	UniRef90	UniRef90_A0A3R5YM73	Recombinase family protein	NA
UHGV-1384234_1	eggNOG-mapper	718252.FP2_29980	NA	NA
UHGV-1384234_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1384234_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-1384234_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1384234_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1384234_2	PHROG	phrog_95	integrase	integration and excision
UHGV-1384234_2	UniRef90	UniRef90_S6CQ54	Sitespecific recombinases DNA invertase Pin homologs	NA
UHGV-1384234_2	eggNOG-mapper	748224.HMPREF9436_01242	NA	NA
UHGV-1384234_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1384234_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1384234_3	KOfam	K14059	int; integrase	NA
UHGV-1384234_3	PHROG	phrog_1	integrase	integration and excision
UHGV-1384234_3	UniRef90	UniRef90_A0A3F3JU91	Tyr recombinase domain-containing protein	NA
UHGV-1384234_3	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-1384234_3	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1384234_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1384234_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1384234_3	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-1384234_5	eggNOG-mapper	645991.Sgly_0349	NA	NA
UHGV-1384234_6	eggNOG-mapper	1280676.AUJO01000009_gene1947	NA	NA
UHGV-1384234_6	Structural annotation	PF02556, MF_00821, NF004392, COG1952	NA	NA
UHGV-1384234_7	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-1384234_7	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-1384234_7	UniRef90	UniRef90_A0A6N7TQ25	Helix-turn-helix domain-containing protein	NA
UHGV-1384234_7	eggNOG-mapper	748224.HMPREF9436_03379	sequence-specific DNA binding	NA
UHGV-1384234_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1384234_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1384234_8	UniRef90	UniRef90_A0A6N7TMW8	HTH cro/C1-type domain-containing protein	NA
UHGV-1384234_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1384234_11	PHROG	phrog_1221	NA	unknown function
UHGV-1384234_11	UniRef90	UniRef90_E2ZNU3	Phage/plasmid-related protein TIGR03299	NA
UHGV-1384234_11	eggNOG-mapper	748224.HMPREF9436_03374	NA	NA
UHGV-1384234_11	Pfam	PF06067	NA	DUF932
UHGV-1384234_11	NCBIFam	TIGR03299.1	phage/plasmid-like protein TIGR03299	NA
UHGV-1384234_11	Structural annotation	PF06067, TIGR03299	NA	NA
UHGV-1384234_15	PHROG	phrog_32852	NA	unknown function
UHGV-1384234_16	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1384234_16	UniRef90	UniRef90_UPI0012DDCD27	Lar family restriction alleviation protein	NA
UHGV-1384234_16	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1384234_16	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-1384234_17	UniRef90	UniRef90_E2ZNT7	HTH_17 domain-containing protein	NA
UHGV-1384234_17	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1384234_18	UniRef90	UniRef90_UPI00130EBC54	NA	NA
UHGV-1384234_18	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-1384234_18	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-1384234_19	PHROG	phrog_32852	NA	unknown function
UHGV-1384234_20	PHROG	phrog_37789	NA	unknown function
UHGV-1384234_24	PHROG	phrog_38771	NA	unknown function
UHGV-1384234_25	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1384234_25	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-1384234_25	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-1384234_25	Pfam	PF13479	AAA domain	AAA_24
UHGV-1384234_25	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-1384234_26	PHROG	phrog_18107	NA	unknown function
UHGV-1384234_26	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-1384234_26	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-1384234_26	Structural annotation	PF05037	NA	NA
UHGV-1384234_27	Structural annotation	PF20964, PF13384, NF011523	NA	NA
UHGV-1384234_28	UniRef90	UniRef90_A0A845R8R0	NA	NA
UHGV-1384234_31	PHROG	phrog_6568	NA	unknown function
UHGV-1384234_31	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-1384234_33	PHROG	phrog_3253	NA	unknown function
UHGV-1384234_33	UniRef90	UniRef90_A0A2J4JRQ6	Resolvase	NA
UHGV-1384234_33	eggNOG-mapper	1151292.QEW_3282	NA	NA
UHGV-1384234_33	Structural annotation	PF18618	NA	NA
UHGV-1384234_36	PHROG	phrog_3136	NA	unknown function
UHGV-1384234_36	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-1384234_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1384234_36	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-1384234_37	KOfam	K03700	recU; recombination protein U	NA
UHGV-1384234_37	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1384234_37	UniRef90	UniRef90_A0A1C5P0D5	Holliday junction resolvase RecU	NA
UHGV-1384234_37	eggNOG-mapper	748224.HMPREF9436_03347	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1384234_37	Pfam	PF03838	Recombination protein U	RecU
UHGV-1384234_37	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-1384234_37	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1384234_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1384234_38	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-1384234_39	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-1384234_39	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1384234_39	UniRef90	UniRef90_UPI001E2E3568	ParB N-terminal domain-containing protein	NA
UHGV-1384234_39	eggNOG-mapper	665956.HMPREF1032_03077	DNA binding	NA
UHGV-1384234_39	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1384234_39	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1384234_39	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1384234_39	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-1384234_40	PHROG	phrog_842	beta-glucosyl-HMC-alpha-glucosyltransferase	other
UHGV-1384234_40	Pfam	PF20691	TET-Associated Glycosyltransferase	TAGT
UHGV-1384234_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1384234_42	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1384234_42	UniRef90	UniRef90_A0A3A6EEP8	PBSX family phage terminase large subunit	NA
UHGV-1384234_42	eggNOG-mapper	1120746.CCNL01000014_gene2093	DNA packaging	NA
UHGV-1384234_42	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1384234_42	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-1384234_42	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1384234_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-1384234_42	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1384234_43	PHROG	phrog_533	portal protein	head and packaging
UHGV-1384234_43	UniRef90	UniRef90_E2ZNR0	Putative phage minor capsid protein	NA
UHGV-1384234_43	eggNOG-mapper	748224.HMPREF9436_03340	NA	NA
UHGV-1384234_43	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1384234_44	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1384234_44	UniRef90	UniRef90_UPI001CBDED93	phage minor capsid protein	NA
UHGV-1384234_44	eggNOG-mapper	748224.HMPREF9436_03339	NA	NA
UHGV-1384234_44	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1384234_44	COG	COG2369	NA	NA
UHGV-1384234_44	Structural annotation	PF06152	NA	NA
UHGV-1384234_47	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1384234_47	UniRef90	UniRef90_E6U604	Minor structural GP20 protein	NA
UHGV-1384234_47	eggNOG-mapper	663278.Ethha_0093	NA	NA
UHGV-1384234_47	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1384234_47	Structural annotation	PF06810	NA	NA
UHGV-1384234_48	PHROG	phrog_10	major head protein	head and packaging
UHGV-1384234_48	UniRef90	UniRef90_A0A2A7AII3	Phage major capsid protein	NA
UHGV-1384234_48	eggNOG-mapper	1120998.AUFC01000030_gene2236	Phage capsid family	NA
UHGV-1384234_48	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1384234_48	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1384234_48	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1384234_48	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1384234_49	eggNOG-mapper	718252.FP2_06630	Minor capsid protein	NA
UHGV-1384234_50	PHROG	phrog_3266	tail completion	connector
UHGV-1384234_50	UniRef90	UniRef90_A0A848BCA5	Chloramphenicol resistance protein	NA
UHGV-1384234_50	eggNOG-mapper	748224.HMPREF9436_03331	NA	NA
UHGV-1384234_50	Structural annotation	PF12691	NA	NA
UHGV-1384234_51	PHROG	phrog_820	major tail protein	tail
UHGV-1384234_51	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-1384234_51	eggNOG-mapper	748224.HMPREF9436_03330	NA	NA
UHGV-1384234_51	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1384234_52	PHROG	phrog_4450	NA	unknown function
UHGV-1384234_52	Structural annotation	PF20378	NA	NA
UHGV-1384234_53	PHROG	phrog_706	NA	unknown function
UHGV-1384234_53	UniRef90	UniRef90_E2ZNP9	Bacteriophage Gp15 protein	NA
UHGV-1384234_53	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-1384234_53	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1384234_53	Structural annotation	PF06854	NA	NA
UHGV-1384234_54	PHROG	phrog_5602	NA	unknown function
UHGV-1384234_55	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-1384234_55	UniRef90	UniRef90_A0A3A6KBM3	TMP_3 domain-containing protein	NA
UHGV-1384234_55	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-1384234_55	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1384234_55	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1384234_55	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-1384234_56	PHROG	phrog_36410	NA	unknown function
UHGV-1384234_56	UniRef90	UniRef90_UPI00130E98E0	phage tail family protein	NA
UHGV-1384234_56	eggNOG-mapper	748224.HMPREF9436_03325	Phage tail protein	NA
UHGV-1384234_56	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1384234_57	PHROG	phrog_538	minor tail protein	tail
UHGV-1384234_57	UniRef90	UniRef90_UPI001899858F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1384234_57	eggNOG-mapper	748224.HMPREF9436_03324	NA	NA
UHGV-1384234_57	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1384234_57	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1384234_58	PHROG	phrog_9534	head protein	head and packaging
UHGV-1384234_58	eggNOG-mapper	748224.HMPREF9436_03323	COG NOG18825 non supervised orthologous group	NA