UHGV-1384551

Genome information

Genome length 57,526 bps

CDS count 106

Completeness 99.85% (high-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-1384551
vOTU ID	vOTU-009117
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-4427763
BioSample	SAMN05414905
Country	Mongolia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.85% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.51
Jumbo phage	No

Genome content
Genome length	57,526 bps
GC content	48.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	106
CDS density	85.74%
Average CDS length	468.31 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1384551_1	PHROG	phrog_13879	NA	unknown function
UHGV-1384551_1	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-1384551_1	Structural annotation	PF19318, PF16466, MF_00813, NF010371, COG4266	NA	NA
UHGV-1384551_2	PHROG	phrog_1194	NA	unknown function
UHGV-1384551_2	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-1384551_2	Pfam	PF20458	NA	DUF6711
UHGV-1384551_2	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1384551_3	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1384551_3	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-1384551_3	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-1384551_4	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-1384551_5	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-1384551_5	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-1384551_5	Pfam	PF16478	NA	DUF5055
UHGV-1384551_5	Structural annotation	PF16478	NA	NA
UHGV-1384551_6	PHROG	phrog_158	major tail protein	tail
UHGV-1384551_6	UniRef90	UniRef90_UPI001D06C8CA	phage tail protein	NA
UHGV-1384551_6	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-1384551_6	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-1384551_7	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-1384551_9	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-1384551_9	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1384551_10	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-1384551_10	Structural annotation	TIGR01560	NA	NA
UHGV-1384551_11	PHROG	phrog_29	major head protein	head and packaging
UHGV-1384551_11	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-1384551_11	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-1384551_11	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1384551_11	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-1384551_14	eggNOG-mapper	1064535.MELS_1945	NA	NA
UHGV-1384551_15	PHROG	phrog_64	portal protein	head and packaging
UHGV-1384551_15	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-1384551_15	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1384551_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1384551_15	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1384551_17	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1384551_17	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-1384551_17	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-1384551_17	COG	COG5410	NA	NA
UHGV-1384551_17	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-1384551_21	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1384551_21	PHROG	phrog_95	integrase	integration and excision
UHGV-1384551_21	UniRef90	UniRef90_A0A3D4G6V8	Resolvase	NA
UHGV-1384551_21	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-1384551_21	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1384551_21	Pfam	PF07508	Recombinase	Recombinase
UHGV-1384551_21	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1384551_21	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1384551_23	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-1384551_24	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1384551_24	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1384551_24	UniRef90	UniRef90_A0A8D4D1X2	Bro-N domain-containing protein	NA
UHGV-1384551_24	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-1384551_24	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1384551_24	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1384551_24	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1384551_25	Structural annotation	PF09624, PF14263, MF_00791, NF038353, TIGR02588, COG4885	NA	NA
UHGV-1384551_29	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1384551_29	eggNOG-mapper	742738.HMPREF9460_00717	YqaJ viral recombinase family	NA
UHGV-1384551_29	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1384551_32	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1384551_32	UniRef90	UniRef90_UPI00189A2F30	replication initiator protein A	NA
UHGV-1384551_32	eggNOG-mapper	411468.CLOSCI_02792	Replication initiator protein A (RepA) N-terminus	NA
UHGV-1384551_32	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1384551_32	COG	COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	NA
UHGV-1384551_32	Structural annotation	PF06970, MF_01177, NF040642, COG5625	NA	NA
UHGV-1384551_35	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1384551_35	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1384551_35	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-1384551_35	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-1384551_35	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1384551_35	COG	COG0305	Replicative DNA helicase	NA
UHGV-1384551_35	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1384551_36	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-1384551_36	Pfam	PF19808	NA	DUF6291
UHGV-1384551_36	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1384551_36	Structural annotation	PF19808	NA	NA
UHGV-1384551_37	UniRef90	UniRef90_UPI001AD832E5	Lar family restriction alleviation protein	NA
UHGV-1384551_37	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1384551_37	Structural annotation	PF14354	NA	NA
UHGV-1384551_41	Structural annotation	NF041588	NA	NA
UHGV-1384551_46	Structural annotation	PF01775, MF_00273, NF001981	NA	NA
UHGV-1384551_49	Structural annotation	PF04319, COG4991	NA	NA
UHGV-1384551_50	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-1384551_50	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-1384551_50	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-1384551_50	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-1384551_51	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-1384551_53	Structural annotation	PF16677	NA	NA
UHGV-1384551_56	PHROG	phrog_32444	NA	unknown function
UHGV-1384551_56	UniRef90	UniRef90_UPI001C0181F9	GNAT family N-acetyltransferase	NA
UHGV-1384551_56	Pfam	PF13302	Acetyltransferase (GNAT) domain	Acetyltransf_3
UHGV-1384551_56	COG	COG1670	Protein N-acetyltransferase, RimJ/RimL family	NA
UHGV-1384551_56	Structural annotation	PF13673, MF_02210, TIGR01575, COG1670	NA	NA
UHGV-1384551_57	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-1384551_57	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1384551_57	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-1384551_57	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-1384551_57	PADLOC	BrxP_00001	BrxP	BREX
UHGV-1384551_57	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1384551_57	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1384551_57	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-1384551_60	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-1384551_60	Structural annotation	PF11998, COG5420	NA	NA
UHGV-1384551_62	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1384551_62	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-1384551_62	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1384551_62	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1384551_65	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1384551_65	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1384551_65	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1384551_65	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-1384551_65	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-1384551_65	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1384551_65	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1384551_65	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1384551_65	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-1384551_66	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1384551_66	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1384551_66	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-1384551_66	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1384551_66	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1384551_66	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1384551_66	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1384551_66	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1384551_66	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1384551_67	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1384551_67	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-1384551_67	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-1384551_67	Pfam	PF04404	ERF superfamily	ERF
UHGV-1384551_67	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1384551_69	UniRef90	UniRef90_A0A7Y4S123	Transcriptional repressor NrdR (Fragment)	NA
UHGV-1384551_69	eggNOG-mapper	1132855.KB913035_gene1070	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-1384551_69	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-1384551_69	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-1384551_69	Structural annotation	PF04606, NF007241	NA	NA
UHGV-1384551_70	Structural annotation	PF14143	NA	NA
UHGV-1384551_71	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1384551_71	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-1384551_73	Structural annotation	TIGR03826	NA	NA
UHGV-1384551_75	Structural annotation	PF10922	NA	NA
UHGV-1384551_76	PHROG	phrog_15946	NA	unknown function
UHGV-1384551_76	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-1384551_77	PHROG	phrog_4652	NA	unknown function
UHGV-1384551_77	UniRef90	UniRef90_A0A0P0DZ87	Cubilin	NA
UHGV-1384551_77	eggNOG-mapper	397290.C810_01459	NA	NA
UHGV-1384551_77	Structural annotation	TIGR02582, COG1604	NA	NA
UHGV-1384551_78	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-1384551_78	UniRef90	UniRef90_A0A8J6LUU7	XRE family transcriptional regulator	NA
UHGV-1384551_78	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-1384551_78	Structural annotation	TIGR03070	NA	NA
UHGV-1384551_79	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1384551_79	UniRef90	UniRef90_A0A1C6D4U5	Helix-turn-helix domain	NA
UHGV-1384551_79	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-1384551_79	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1384551_79	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1384551_79	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-1384551_82	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-1384551_82	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1384551_82	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-1384551_83	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1384551_83	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-1384551_83	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-1384551_83	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-1384551_83	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-1384551_83	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-1384551_83	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-1384551_86	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1384551_86	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1384551_86	UniRef90	UniRef90_A0A1G6FF50	Chromosome partitioning protein	NA
UHGV-1384551_86	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-1384551_86	Pfam	PF13614	AAA domain	AAA_31
UHGV-1384551_86	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1384551_86	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-1384551_87	Pfam	PF04448	NA	DUF551
UHGV-1384551_87	Structural annotation	NF041588	NA	NA
UHGV-1384551_88	Structural annotation	PF07878	NA	NA
UHGV-1384551_92	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-1384551_93	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-1384551_94	PHROG	phrog_16490	NA	unknown function
UHGV-1384551_94	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1384551_99	PHROG	phrog_15303	NA	unknown function
UHGV-1384551_99	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-1384551_101	KOfam	K07273	acm; lysozyme	NA
UHGV-1384551_101	PHROG	phrog_291	endolysin	lysis
UHGV-1384551_101	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-1384551_101	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-1384551_101	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1384551_101	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1384551_101	Structural annotation	PF01183, COG3757	NA	NA
UHGV-1384551_102	PHROG	phrog_1382	NA	unknown function
UHGV-1384551_102	eggNOG-mapper	411468.CLOSCI_00272	NA	NA
UHGV-1384551_104	eggNOG-mapper	748224.HMPREF9436_01407	COG NOG18825 non supervised orthologous group	NA
UHGV-1384551_105	PHROG	phrog_18725	NA	unknown function
UHGV-1384551_105	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-1384551_106	Pfam	PF19789	NA	DUF6273