UHGV-1384576

Genome information

Genome length 23,548 bps

CDS count 34

Completeness 59.61% (medium-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-1384576
vOTU ID	vOTU-034048
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0172503
BioSample	SAMEA2581935
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.44
Jumbo phage	No

Genome content
Genome length	23,548 bps
GC content	49.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	93.69%
Average CDS length	652.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1384576_2	PHROG	phrog_7121	tail fiber protein	tail
UHGV-1384576_2	UniRef90	UniRef90_R5ACE5	Peptidase S74 domain-containing protein	NA
UHGV-1384576_2	eggNOG-mapper	445971.ANASTE_00093	COG COG5295 Autotransporter adhesin	NA
UHGV-1384576_2	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1384576_2	Structural annotation	PF07902, NF041249	NA	NA
UHGV-1384576_3	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1384576_3	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-1384576_3	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-1384576_4	PHROG	phrog_12105	NA	unknown function
UHGV-1384576_4	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-1384576_5	PHROG	phrog_2310	NA	unknown function
UHGV-1384576_5	eggNOG-mapper	1391647.AVSV01000022_gene2576	NA	NA
UHGV-1384576_5	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1384576_7	Structural annotation	PF13157	NA	NA
UHGV-1384576_8	PHROG	phrog_18723	NA	unknown function
UHGV-1384576_9	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-1384576_9	PHROG	phrog_25888	NA	unknown function
UHGV-1384576_9	eggNOG-mapper	1232443.BAIA02000078_gene14	nuclear chromosome segregation	NA
UHGV-1384576_9	Pfam	PF08880	QLQ	QLQ
UHGV-1384576_9	Pfam	PF17891	Mu-like prophage FluMu N-terminal domain	FluMu_N
UHGV-1384576_9	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1384576_10	PHROG	phrog_15239	NA	unknown function
UHGV-1384576_10	UniRef90	UniRef90_R5AJ41	Conserved domain protein	NA
UHGV-1384576_11	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1384576_11	UniRef90	UniRef90_A0A416JW11	N4-gp56 family major capsid protein	NA
UHGV-1384576_11	eggNOG-mapper	657322.FPR_02330	NA	NA
UHGV-1384576_11	Pfam	PF13252	NA	DUF4043
UHGV-1384576_11	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1384576_11	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1384576_12	PHROG	phrog_13908	NA	unknown function
UHGV-1384576_12	eggNOG-mapper	1321782.HMPREF1986_00346	NA	NA
UHGV-1384576_13	KOfam	K07584	NA	NA
UHGV-1384576_13	PHROG	phrog_4478	peptidase	other
UHGV-1384576_13	UniRef90	UniRef90_A0A7C6L8N4	Ribosomal-processing cysteine protease Prp	NA
UHGV-1384576_13	eggNOG-mapper	748224.HMPREF9436_01398	Cysteine protease Prp	NA
UHGV-1384576_13	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-1384576_13	COG	COG2868	NA	NA
UHGV-1384576_13	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-1384576_14	PHROG	phrog_156	portal protein	head and packaging
UHGV-1384576_14	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-1384576_14	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1384576_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1384576_15	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1384576_15	UniRef90	UniRef90_A0A329UJ95	Terminase-like family protein	NA
UHGV-1384576_15	eggNOG-mapper	748224.HMPREF9436_02548	Terminase-like family	NA
UHGV-1384576_15	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1384576_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-1384576_15	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1384576_16	Structural annotation	PF06056	NA	NA
UHGV-1384576_18	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-1384576_19	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1384576_19	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-1384576_19	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-1384576_19	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1384576_19	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1384576_19	Structural annotation	PF01507, MF_00064, TIGR02055, COG0175	NA	NA
UHGV-1384576_20	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-1384576_20	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-1384576_20	eggNOG-mapper	913865.DOT_0576	NA	NA
UHGV-1384576_20	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-1384576_20	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-1384576_20	Structural annotation	PF02540, NF010587, COG0519	NA	NA
UHGV-1384576_22	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1384576_22	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1384576_22	UniRef90	UniRef90_UPI0018970F97	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1384576_22	eggNOG-mapper	1499683.CCFF01000017_gene2594	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-1384576_22	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1384576_22	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1384576_22	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1384576_22	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1384576_22	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1384576_23	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1384576_23	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1384576_23	UniRef90	UniRef90_A0A350TVI6	Single-stranded DNA-binding protein	NA
UHGV-1384576_23	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-1384576_23	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1384576_23	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1384576_23	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1384576_23	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1384576_23	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1384576_25	PHROG	phrog_29930	NA	unknown function
UHGV-1384576_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1384576_26	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-1384576_26	Structural annotation	PF21578, NF041486	NA	NA
UHGV-1384576_28	PHROG	phrog_24518	NA	unknown function
UHGV-1384576_28	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-1384576_30	Structural annotation	PF06257, COG4466	NA	NA
UHGV-1384576_32	UniRef90	UniRef90_A0A352SIQ1	HTH cro/C1-type domain-containing protein	NA
UHGV-1384576_32	eggNOG-mapper	1292035.H476_1036	NA	NA
UHGV-1384576_32	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1384576_32	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-1384576_33	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1384576_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1384576_33	UniRef90	UniRef90_UPI00164CFD58	helix-turn-helix domain-containing protein	NA
UHGV-1384576_33	eggNOG-mapper	632245.CLP_2722	Helix-turn-helix XRE-family like proteins	NA
UHGV-1384576_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1384576_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1384576_33	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-1384576_34	eggNOG-mapper	1163671.JAGI01000002_gene1685	Flagellar rod assembly protein muramidase FlgJ	NA
UHGV-1384576_34	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-1384576_34	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA