UHGV-1384839

Genome information

vOTU vOTU-020280

Genome length 22,319 bps

CDS count 29

Completeness 71.08% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-1384839
vOTU ID	vOTU-020280
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0163727
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.08% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.34
Jumbo phage	No

Genome content
Genome length	22,319 bps
GC content	43.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	96.45%
Average CDS length	744.52 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1384839_1	PHROG	phrog_16241	endolysin	lysis
UHGV-1384839_1	UniRef90	UniRef90_R6IVV6	Possible cell wall-binding protein	NA
UHGV-1384839_1	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-1384839_1	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1384839_1	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-1384839_1	Structural annotation	PF01476, TIGR02899, COG1388	NA	NA
UHGV-1384839_2	PHROG	phrog_263	holin	lysis
UHGV-1384839_2	UniRef90	UniRef90_UPI00164AA2E4	phage holin	NA
UHGV-1384839_2	eggNOG-mapper	1158607.UAU_01779	SPP1 phage holin	NA
UHGV-1384839_2	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-1384839_2	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-1384839_2	Structural annotation	PF04688	NA	NA
UHGV-1384839_3	PHROG	phrog_4105	NA	unknown function
UHGV-1384839_3	eggNOG-mapper	1235790.C805_00613	NA	NA
UHGV-1384839_5	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-1384839_5	UniRef90	UniRef90_UPI00164B563B	phage tail assembly chaperone	NA
UHGV-1384839_5	eggNOG-mapper	269482.Bcep1808_1285	Phage tail assembly chaperone protein	NA
UHGV-1384839_5	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-1384839_5	Structural annotation	PF16778	NA	NA
UHGV-1384839_6	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-1384839_6	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-1384839_6	UniRef90	UniRef90_R6GLF4	Reverse transcriptase domain-containing protein	NA
UHGV-1384839_6	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-1384839_6	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-1384839_6	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-1384839_6	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-1384839_6	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-1384839_7	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-1384839_7	eggNOG-mapper	1235797.C816_02835	NA	NA
UHGV-1384839_7	Structural annotation	PF05635, NF008911	NA	NA
UHGV-1384839_8	PHROG	phrog_19280	NA	unknown function
UHGV-1384839_8	UniRef90	UniRef90_UPI00164B6084	NA	NA
UHGV-1384839_8	eggNOG-mapper	537013.CLOSTMETH_03776	NA	NA
UHGV-1384839_8	Pfam	PF19789	NA	DUF6273
UHGV-1384839_8	Structural annotation	PF19789, PF10651	NA	NA
UHGV-1384839_9	PHROG	phrog_372	tail protein	tail
UHGV-1384839_9	UniRef90	UniRef90_A0A1Y4NAZ0	Fibronectin type-III domain-containing protein	NA
UHGV-1384839_9	eggNOG-mapper	638301.HMPREF0444_1495	NA	NA
UHGV-1384839_9	Pfam	PF05895	NA	DUF859
UHGV-1384839_9	Structural annotation	PF05895, MF_04116, NF010681, COG3401	NA	NA
UHGV-1384839_10	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1384839_10	UniRef90	UniRef90_R6GLF8	Phage minor structural protein region	NA
UHGV-1384839_10	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-1384839_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1384839_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1384839_10	COG	COG4926	Phage-related protein	NA
UHGV-1384839_10	Structural annotation	PF14594, PF04862, TIGR01665, NF033675, COG4926, COG4935	NA	NA
UHGV-1384839_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1384839_11	UniRef90	UniRef90_R6GVG8	Phage putative tail component N-domain protein	NA
UHGV-1384839_11	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-1384839_11	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1384839_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-1384839_11	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1384839_12	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-1384839_12	UniRef90	UniRef90_R6GII4	Immunity-specific protein Beta241	NA
UHGV-1384839_12	eggNOG-mapper	1160721.RBI_I01576	tail tape measure protein, TP901	NA
UHGV-1384839_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1384839_12	COG	COG5283	Phage-related tail protein	NA
UHGV-1384839_15	PHROG	phrog_885	major tail protein	tail
UHGV-1384839_15	UniRef90	UniRef90_A0A7C6X6S5	Ig-like domain-containing protein	NA
UHGV-1384839_15	eggNOG-mapper	1160721.RBI_I01578	NA	NA
UHGV-1384839_15	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-1384839_16	PHROG	phrog_957	head protein	head and packaging
UHGV-1384839_16	Structural annotation	PF11367	NA	NA
UHGV-1384839_17	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-1384839_17	UniRef90	UniRef90_R6HH08	Putative phage head-tail adaptor	NA
UHGV-1384839_17	eggNOG-mapper	1160721.RBI_I01580	head-tail adaptor	NA
UHGV-1384839_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1384839_17	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1384839_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1384839_18	PHROG	phrog_5223	neck protein	connector
UHGV-1384839_18	UniRef90	UniRef90_R6GII7	Putative phage DNA packaging-like protein	NA
UHGV-1384839_18	eggNOG-mapper	1160721.RBI_I01581	NA	NA
UHGV-1384839_18	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1384839_18	Structural annotation	TIGR01560	NA	NA
UHGV-1384839_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-1384839_19	UniRef90	UniRef90_R6GU80	Phage major capsid protein family	NA
UHGV-1384839_19	eggNOG-mapper	1203606.HMPREF1526_01339	Phage capsid family	NA
UHGV-1384839_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1384839_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1384839_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1384839_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1384839_20	KOfam	K06904	NA	NA
UHGV-1384839_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1384839_20	UniRef90	UniRef90_R6GVH9	Phage prohead protease HK97 family	NA
UHGV-1384839_20	eggNOG-mapper	1160721.RBI_I01583	Caudovirus prohead serine protease	NA
UHGV-1384839_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1384839_20	COG	COG3740	Phage head maturation protease	NA
UHGV-1384839_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1384839_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-1384839_21	UniRef90	UniRef90_UPI00164A28CE	phage portal protein	NA
UHGV-1384839_21	eggNOG-mapper	1160721.RBI_I01584	Phage portal protein	NA
UHGV-1384839_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1384839_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1384839_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1384839_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1384839_22	UniRef90	UniRef90_R6GIJ2	Terminase	NA
UHGV-1384839_22	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-1384839_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1384839_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1384839_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1384839_22	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1384839_23	PHROG	phrog_1066	NA	unknown function
UHGV-1384839_23	UniRef90	UniRef90_W0U724	Phage terminase-like protein, small subunit	NA
UHGV-1384839_23	eggNOG-mapper	1160721.RBI_I01586	NA	NA
UHGV-1384839_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1384839_24	Structural annotation	PF11305, MF_01360, NF010236	NA	NA
UHGV-1384839_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1384839_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1384839_25	UniRef90	UniRef90_UPI00164BCC03	HNH endonuclease	NA
UHGV-1384839_25	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-1384839_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1384839_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1384839_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1384839_26	UniRef90	UniRef90_UPI00164ADA1B	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1384839_26	eggNOG-mapper	768710.DesyoDRAFT_5229	NA	NA
UHGV-1384839_26	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1384839_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1384839_29	eggNOG-mapper	1160721.RBI_I01590	NA	NA