UHGV-1385091

Genome information

Genome length 22,046 bps

CDS count 25

Completeness 51.81% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-1385091
vOTU ID	vOTU-034065
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0161692
BioSample	SAMEA2738148
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.45
Jumbo phage	No

Genome content
Genome length	22,046 bps
GC content	42.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	94.90%
Average CDS length	841.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1385091_1	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1385091_1	UniRef90	UniRef90_UPI001A181975	P27 family phage terminase small subunit	NA
UHGV-1385091_1	eggNOG-mapper	1121871.AUAT01000002_gene1360	Phage terminase, small subunit	NA
UHGV-1385091_1	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1385091_1	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1385091_1	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1385091_1	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1385091_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1385091_2	UniRef90	UniRef90_UPI001BD8F393	Terminase large subunit	NA
UHGV-1385091_2	eggNOG-mapper	1121871.AUAT01000002_gene1359	Phage Terminase	NA
UHGV-1385091_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1385091_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1385091_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1385091_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1385091_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-1385091_3	UniRef90	UniRef90_UPI00040C7753	phage portal protein	NA
UHGV-1385091_3	eggNOG-mapper	1121871.AUAT01000002_gene1358	portal protein	NA
UHGV-1385091_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1385091_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1385091_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1385091_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1385091_4	KOfam	K06904	NA	NA
UHGV-1385091_4	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1385091_4	UniRef90	UniRef90_A0A4Y9J3F6	HK97 family phage prohead protease	NA
UHGV-1385091_4	eggNOG-mapper	1121871.AUAT01000002_gene1357	Prohead protease, HK97 family	NA
UHGV-1385091_4	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1385091_4	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1385091_4	COG	COG3740	Phage head maturation protease	NA
UHGV-1385091_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1385091_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-1385091_5	UniRef90	UniRef90_UPI001B929868	Phage major capsid protein	NA
UHGV-1385091_5	eggNOG-mapper	1121871.AUAT01000002_gene1355	phage major capsid protein, HK97	NA
UHGV-1385091_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1385091_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1385091_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1385091_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1385091_7	PHROG	phrog_25	head closure Hc1	connector
UHGV-1385091_7	UniRef90	UniRef90_UPI001A1C46E4	Phage head closure protein	NA
UHGV-1385091_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1385091_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1385091_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1385091_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1385091_8	UniRef90	UniRef90_UPI001A2EC611	HK97 gp10 family phage protein	NA
UHGV-1385091_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1385091_8	Structural annotation	TIGR01725	NA	NA
UHGV-1385091_9	PHROG	phrog_78	tail terminator	connector
UHGV-1385091_10	PHROG	phrog_88	major tail protein	tail
UHGV-1385091_10	UniRef90	UniRef90_UPI001AE5DC52	phage tail protein	NA
UHGV-1385091_10	eggNOG-mapper	1121871.AUAT01000002_gene1350	phage major tail protein, phi13 family	NA
UHGV-1385091_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1385091_10	COG	COG5492	NA	NA
UHGV-1385091_10	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1385091_11	PHROG	phrog_187	head-tail adaptor	connector
UHGV-1385091_12	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-1385091_12	UniRef90	UniRef90_UPI001BD85B59	Phage tail tape measure protein	NA
UHGV-1385091_12	eggNOG-mapper	1121871.AUAT01000002_gene1347	Phage-related minor tail protein	NA
UHGV-1385091_12	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1385091_12	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1385091_12	COG	COG5283	Phage-related tail protein	NA
UHGV-1385091_12	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1385091_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1385091_15	eggNOG-mapper	592010.GCWU000182_001496	Phage minor structural protein	NA
UHGV-1385091_15	COG	COG4926	Phage-related protein	NA
UHGV-1385091_18	PHROG	phrog_1330	tail protein	tail
UHGV-1385091_18	UniRef90	UniRef90_W1Q2L3	Gp58 domain-containing protein	NA
UHGV-1385091_18	eggNOG-mapper	883081.HMPREF9698_01625	gp58-like protein	NA
UHGV-1385091_18	Pfam	PF07902	gp58-like protein	Gp58
UHGV-1385091_18	COG	COG1511	NA	NA
UHGV-1385091_18	Structural annotation	PF20132	NA	NA
UHGV-1385091_20	PHROG	phrog_1554	NA	unknown function
UHGV-1385091_22	PHROG	phrog_1296	holin	lysis
UHGV-1385091_23	PHROG	phrog_33625	holin	lysis
UHGV-1385091_23	UniRef90	UniRef90_W1Q2L7	Holin, phage phi LC3 family	NA
UHGV-1385091_23	eggNOG-mapper	592010.GCWU000182_001503	Bacteriophage holin	NA
UHGV-1385091_23	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1385091_23	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1385091_23	COG	COG5546	NA	NA
UHGV-1385091_23	Structural annotation	COG5546	NA	NA
UHGV-1385091_24	PHROG	phrog_3861	amidase	lysis
UHGV-1385091_24	UniRef90	UniRef90_W1Q2N4	Cpl-7 lysozyme protein	NA
UHGV-1385091_24	eggNOG-mapper	592010.GCWU000182_001504	Pfam:Cpl-7	NA
UHGV-1385091_24	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1385091_24	Pfam	PF05257	CHAP domain	CHAP
UHGV-1385091_24	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-1385091_24	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-1385091_24	COG	COG1388	LysM repeat	NA