UHGV-1385128

Genome information

Genome length 19,548 bps

CDS count 30

Completeness 51.23% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-1385128
vOTU ID	vOTU-022808
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-4359230
BioSample	SAMEA2580206
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	51.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.12
Jumbo phage	No

Genome content
Genome length	19,548 bps
GC content	44.79%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	87.56%
Average CDS length	572.40 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1385128_1	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1385128_1	UniRef90	UniRef90_A0A826HV97	Prophage Lp1 protein 20	NA
UHGV-1385128_1	eggNOG-mapper	220668.lp_0643	NA	NA
UHGV-1385128_1	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-1385128_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1385128_2	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1385128_2	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1385128_2	UniRef90	UniRef90_K6RQE6	Single-stranded DNA-binding protein	NA
UHGV-1385128_2	eggNOG-mapper	568703.LGG_01107	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1385128_2	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1385128_2	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1385128_2	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1385128_2	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1385128_2	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1385128_3	PHROG	phrog_4378	NA	unknown function
UHGV-1385128_3	UniRef90	UniRef90_S2NM73	NA	NA
UHGV-1385128_3	eggNOG-mapper	1423732.BALS01000098_gene1435	NA	NA
UHGV-1385128_3	Structural annotation	PF09953, PF19575	NA	NA
UHGV-1385128_4	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1385128_4	UniRef90	UniRef90_A0A179YIE3	NA	NA
UHGV-1385128_4	eggNOG-mapper	279281.Q6J1V2_9CAUD	NA	NA
UHGV-1385128_4	Pfam	PF06356	NA	DUF1064
UHGV-1385128_4	Structural annotation	PF06356, MF_04160, NF033179, COG2887	NA	NA
UHGV-1385128_5	PHROG	phrog_5105	NA	unknown function
UHGV-1385128_5	UniRef90	UniRef90_UPI000920AEDE	endonuclease	NA
UHGV-1385128_5	eggNOG-mapper	568703.LGG_01113	NA	NA
UHGV-1385128_6	PHROG	phrog_5222	NA	unknown function
UHGV-1385128_6	UniRef90	UniRef90_A0A0E2BWQ8	NA	NA
UHGV-1385128_7	PHROG	phrog_31025	NA	unknown function
UHGV-1385128_7	UniRef90	UniRef90_A0A6B8YX87	4Fe-4S ferredoxin, iron-sulfur binding	NA
UHGV-1385128_8	eggNOG-mapper	1423816.BACQ01000027_gene956	NA	NA
UHGV-1385128_9	PHROG	phrog_98	NA	unknown function
UHGV-1385128_9	UniRef90	UniRef90_A0A0C9Q759	YopX domain-containing protein	NA
UHGV-1385128_9	eggNOG-mapper	1462526.BN990_01815	YopX protein	NA
UHGV-1385128_9	Pfam	PF09643	YopX protein	YopX
UHGV-1385128_9	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1385128_9	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1385128_10	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-1385128_10	UniRef90	UniRef90_C2FEC2	HTH cro/C1-type domain-containing protein	NA
UHGV-1385128_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1385128_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1385128_10	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-1385128_11	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-1385128_11	UniRef90	UniRef90_A0A5P8Q6J3	Transcriptional regulator	NA
UHGV-1385128_11	eggNOG-mapper	146269.A8YQN1_9CAUD	NA	NA
UHGV-1385128_11	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-1385128_11	Structural annotation	TIGR01637	NA	NA
UHGV-1385128_12	eggNOG-mapper	1395513.P343_08215	NA	NA
UHGV-1385128_14	PHROG	phrog_704	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1385128_14	UniRef90	UniRef90_Q037C7	NA	NA
UHGV-1385128_14	eggNOG-mapper	543734.LCABL_13210	GcrA cell cycle regulator	NA
UHGV-1385128_14	Pfam	PF07750	GcrA cell cycle regulator	GcrA
UHGV-1385128_14	Structural annotation	PF12850, MF_00905, NF008359, COG2908	NA	NA
UHGV-1385128_15	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1385128_15	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1385128_15	UniRef90	UniRef90_A0A806LIM1	Terminase	NA
UHGV-1385128_15	eggNOG-mapper	568703.LGG_01124	Terminase small subunit	NA
UHGV-1385128_15	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1385128_15	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1385128_15	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1385128_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1385128_16	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1385128_16	UniRef90	UniRef90_A0A0R1MXR4	Phage terminase, large subunit, pbsx family	NA
UHGV-1385128_16	eggNOG-mapper	568703.LGG_01125	Terminase RNAseH like domain	NA
UHGV-1385128_16	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1385128_16	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1385128_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1385128_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-1385128_16	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1385128_17	PHROG	phrog_533	portal protein	head and packaging
UHGV-1385128_17	UniRef90	UniRef90_A0A0R1N257	Minor capsid protein	NA
UHGV-1385128_17	eggNOG-mapper	562981.HMPREF0428_00984	portal protein	NA
UHGV-1385128_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1385128_17	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1385128_17	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1385128_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1385128_18	UniRef90	UniRef90_A0A806L984	Capsid protein	NA
UHGV-1385128_18	eggNOG-mapper	762051.LKI_09675	Phage minor capsid protein 2	NA
UHGV-1385128_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1385128_18	COG	COG2369	NA	NA
UHGV-1385128_18	Structural annotation	PF06152	NA	NA
UHGV-1385128_19	PHROG	phrog_12216	NA	unknown function
UHGV-1385128_19	UniRef90	UniRef90_A0A179YAR6	Acyl--CoA ligase	NA
UHGV-1385128_19	eggNOG-mapper	1158614.I592_02269	NA	NA
UHGV-1385128_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1385128_20	UniRef90	UniRef90_A0A806LFN2	Scaffold protein	NA
UHGV-1385128_20	eggNOG-mapper	1246.JMEA01000006_gene40	Phage minor structural protein GP20	NA
UHGV-1385128_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1385128_20	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-1385128_21	PHROG	phrog_544	major head protein	head and packaging
UHGV-1385128_21	UniRef90	UniRef90_A0A0R1MRS0	Major head protein	NA
UHGV-1385128_21	eggNOG-mapper	762051.LKI_09685	NA	NA
UHGV-1385128_21	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1385128_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1385128_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1385128_22	eggNOG-mapper	1196028.ALEF01000043_gene462	NA	NA
UHGV-1385128_23	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1385128_23	UniRef90	UniRef90_UPI00090013CF	putative minor capsid protein	NA
UHGV-1385128_23	eggNOG-mapper	1140001.I571_02112	Minor capsid protein	NA
UHGV-1385128_23	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1385128_23	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1385128_24	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1385128_24	UniRef90	UniRef90_A0A806LHI7	Minor capsid protein 2	NA
UHGV-1385128_24	eggNOG-mapper	1300150.EMQU_2260	Minor capsid protein	NA
UHGV-1385128_24	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1385128_24	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-1385128_25	PHROG	phrog_913	minor head protein	head and packaging
UHGV-1385128_25	UniRef90	UniRef90_A0A806LC99	Capsid protein	NA
UHGV-1385128_25	eggNOG-mapper	1158601.I585_01152	Minor capsid protein from bacteriophage	NA
UHGV-1385128_25	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-1385128_25	Structural annotation	PF12691	NA	NA
UHGV-1385128_26	PHROG	phrog_820	major tail protein	tail
UHGV-1385128_26	UniRef90	UniRef90_A0A0R1N259	Minor capsid protein	NA
UHGV-1385128_26	eggNOG-mapper	52979.O03972_9CAUD	NA	NA
UHGV-1385128_26	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1385128_27	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-1385128_27	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-1385128_27	UniRef90	UniRef90_A0A806LIK8	BIG2 domain-containing protein	NA
UHGV-1385128_27	eggNOG-mapper	1423816.BACQ01000026_gene936	Bacterial Ig-like domain 2	NA
UHGV-1385128_27	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1385128_27	COG	COG5492	NA	NA
UHGV-1385128_27	Structural annotation	PF02368, TIGR04225	NA	NA
UHGV-1385128_28	PHROG	phrog_10257	minor head protein	head and packaging
UHGV-1385128_29	PHROG	phrog_706	NA	unknown function
UHGV-1385128_29	UniRef90	UniRef90_UPI000F79E25C	Gp15 family bacteriophage protein	NA
UHGV-1385128_29	eggNOG-mapper	52979.O03936_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-1385128_29	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1385128_29	Structural annotation	PF06854	NA	NA