UHGV-1385172

Genome information

Genome length 23,535 bps

CDS count 45

Completeness 59.46% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-1385172
vOTU ID	vOTU-039228
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0172395
BioSample	NA
Country	Spain
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.46% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.42
Jumbo phage	No

Genome content
Genome length	23,535 bps
GC content	59.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	89.07%
Average CDS length	468.60 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1385172_1	UniRef90	UniRef90_A0A076JN63	DNAase primase	NA
UHGV-1385172_1	eggNOG-mapper	1680.BADO_1234	NA	NA
UHGV-1385172_1	Structural annotation	PF08890	NA	NA
UHGV-1385172_2	PHROG	phrog_2491	major tail protein	tail
UHGV-1385172_2	UniRef90	UniRef90_A0A076JPN9	Gp28	NA
UHGV-1385172_2	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-1385172_2	Structural annotation	PF16463, TIGR02241, COG3498	NA	NA
UHGV-1385172_3	UniRef90	UniRef90_A0A076JJ59	Transcriptional regulator	NA
UHGV-1385172_3	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-1385172_3	Structural annotation	PF06141	NA	NA
UHGV-1385172_4	PHROG	phrog_19109	NA	unknown function
UHGV-1385172_4	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-1385172_4	Structural annotation	TIGR01725	NA	NA
UHGV-1385172_5	PHROG	phrog_13779	NA	unknown function
UHGV-1385172_5	UniRef90	UniRef90_A0A087BHJ4	Phage associated protein	NA
UHGV-1385172_5	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-1385172_5	Pfam	PF19586	NA	DUF6093
UHGV-1385172_5	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1385172_6	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1385172_6	UniRef90	UniRef90_A0A087BHJ5	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1385172_6	eggNOG-mapper	593907.Celgi_1301	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1385172_6	Structural annotation	PF09355	NA	NA
UHGV-1385172_8	PHROG	phrog_10	major head protein	head and packaging
UHGV-1385172_8	UniRef90	UniRef90_UPI000C30DF47	phage major capsid protein	NA
UHGV-1385172_8	eggNOG-mapper	1273125.Rrhod_0602	Phage capsid family	NA
UHGV-1385172_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1385172_8	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1385172_8	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1385172_8	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1385172_10	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-1385172_10	UniRef90	UniRef90_A0A2P1JT02	Capsid maturation protease	NA
UHGV-1385172_10	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-1385172_11	PHROG	phrog_104	portal protein	head and packaging
UHGV-1385172_11	UniRef90	UniRef90_UPI000C3130D9	phage portal protein	NA
UHGV-1385172_11	eggNOG-mapper	1273125.Rrhod_0599	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1385172_11	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1385172_11	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-1385172_12	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-1385172_12	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-1385172_12	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-1385172_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1385172_12	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1385172_13	PHROG	phrog_226	minor tail protein	tail
UHGV-1385172_13	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-1385172_16	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1385172_16	UniRef90	UniRef90_A0A133KJK7	G28 phagic protein	NA
UHGV-1385172_16	eggNOG-mapper	398513.BBNG_00839	Transcriptional regulator	NA
UHGV-1385172_16	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1385172_16	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-1385172_17	PHROG	phrog_4268	transcriptional repressor	transcription regulation
UHGV-1385172_17	UniRef90	UniRef90_A0A0M0VNS0	Addiction module antitoxin	NA
UHGV-1385172_17	eggNOG-mapper	216816.GS08_06710	Addiction module	NA
UHGV-1385172_17	Pfam	PF21716	Probable addiction module antidote protein	dnstrm_HI1420
UHGV-1385172_17	NCBIFam	TIGR02684.1	addiction module antidote protein	NA
UHGV-1385172_17	COG	COG3636	NA	NA
UHGV-1385172_17	Structural annotation	PF21716, TIGR02684, COG3636	NA	NA
UHGV-1385172_18	PHROG	phrog_3445	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-1385172_18	UniRef90	UniRef90_A0A1S2VZ23	Type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-1385172_18	eggNOG-mapper	698961.CGSMWGv6119V5_00942	NA	NA
UHGV-1385172_18	Pfam	PF05973	NA	Gp49
UHGV-1385172_18	NCBIFam	TIGR02683.1	type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-1385172_18	COG	COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	NA
UHGV-1385172_18	Structural annotation	PF05973, TIGR02683, COG3657	NA	NA
UHGV-1385172_19	PHROG	phrog_908	NA	unknown function
UHGV-1385172_19	UniRef90	UniRef90_UPI001EFA1AFA	NA	NA
UHGV-1385172_19	eggNOG-mapper	702459.BBPR_0899	NA	NA
UHGV-1385172_19	Structural annotation	COG0789	NA	NA
UHGV-1385172_20	PHROG	phrog_21636	NA	unknown function
UHGV-1385172_20	Structural annotation	PF11427	NA	NA
UHGV-1385172_21	Structural annotation	PF11180, TIGR04550, COG4226	NA	NA
UHGV-1385172_26	PHROG	phrog_774	NA	unknown function
UHGV-1385172_26	UniRef90	UniRef90_W6F043	NA	NA
UHGV-1385172_26	eggNOG-mapper	1435051.BMOU_0242	Helix-turn-helix domain	NA
UHGV-1385172_26	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1385172_29	eggNOG-mapper	1437605.BACT_1092	NA	NA
UHGV-1385172_29	Structural annotation	PF11417	NA	NA
UHGV-1385172_30	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1385172_30	UniRef90	UniRef90_A0A087CSI5	Putative replication protein	NA
UHGV-1385172_30	eggNOG-mapper	1437610.BREU_1408	NA	NA
UHGV-1385172_30	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1385172_32	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1385172_32	UniRef90	UniRef90_A0A087DAB2	NA	NA
UHGV-1385172_32	eggNOG-mapper	1437610.BREU_1411	NA	NA
UHGV-1385172_32	Structural annotation	PF13588, COG1591	NA	NA
UHGV-1385172_33	UniRef90	UniRef90_A0A6I1BWL6	Ferredoxin	NA
UHGV-1385172_34	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-1385172_35	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1385172_35	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1385172_35	UniRef90	UniRef90_A0A4R0S3A9	DNA binding, phage related protein	NA
UHGV-1385172_35	eggNOG-mapper	1341695.BBOMB_1056	RecT family	NA
UHGV-1385172_35	Pfam	PF03837	RecT family	RecT
UHGV-1385172_35	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1385172_35	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1385172_35	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-1385172_36	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1385172_36	UniRef90	UniRef90_UPI000E4508E7	YqaJ viral recombinase family protein	NA
UHGV-1385172_36	eggNOG-mapper	1437610.BREU_1416	YqaJ-like viral recombinase domain	NA
UHGV-1385172_36	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1385172_36	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1385172_36	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1385172_36	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1385172_38	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1385172_39	eggNOG-mapper	1437610.BREU_1419	NA	NA
UHGV-1385172_39	Structural annotation	PF12750	NA	NA
UHGV-1385172_40	UniRef90	UniRef90_C5E9W8	HTH psq-type domain-containing protein	NA
UHGV-1385172_40	eggNOG-mapper	1688.BCUN_0426	NA	NA
UHGV-1385172_40	Pfam	PF05225	helix-turn-helix, Psq domain	HTH_psq
UHGV-1385172_41	UniRef90	UniRef90_C5E9W9	DNA-binding helix-turn-helix protein	NA
UHGV-1385172_41	eggNOG-mapper	1437603.BMON_0975	Helix-turn-helix XRE-family like proteins	NA
UHGV-1385172_42	PHROG	phrog_87	metallo-protease	other
UHGV-1385172_42	UniRef90	UniRef90_A0A5M9ZUX8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1385172_42	eggNOG-mapper	158787.BSCA_0773	NA	NA
UHGV-1385172_42	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1385172_42	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1385172_43	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-1385172_43	UniRef90	UniRef90_A0A080N626	Host cell surface-exposed lipoprotein	NA
UHGV-1385172_43	eggNOG-mapper	1341695.BBOMB_0551	Host cell surface-exposed lipoprotein	NA
UHGV-1385172_43	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-1385172_43	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-1385172_45	PHROG	phrog_3243	NA	unknown function
UHGV-1385172_45	eggNOG-mapper	398513.BBNG_00812	NA	NA