UHGV-1385483

Genome information

vOTU vOTU-042046

Genome length 30,076 bps

CDS count 43

Completeness 86.92% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-1385483
vOTU ID	vOTU-042046
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0211878
BioSample	NA
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.14
Jumbo phage	No

Genome content
Genome length	30,076 bps
GC content	40.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	90.87%
Average CDS length	637.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1385483_1	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-1385483_1	UniRef90	UniRef90_A0A843HN34	HNH endonuclease	NA
UHGV-1385483_1	eggNOG-mapper	1536769.P40081_01050	HNH nucleases	NA
UHGV-1385483_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1385483_1	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-1385483_2	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1385483_2	UniRef90	UniRef90_A0A6B9SX71	Transposase/terminase small subunit	NA
UHGV-1385483_2	eggNOG-mapper	500633.CLOHIR_01443	HNH endonuclease	NA
UHGV-1385483_2	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1385483_2	Structural annotation	PF07141	NA	NA
UHGV-1385483_3	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-1385483_3	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1385483_3	UniRef90	UniRef90_A0A233V9X7	DNA modification methylase	NA
UHGV-1385483_3	eggNOG-mapper	290402.Cbei_1632	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1385483_3	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1385483_3	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1385483_3	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1385483_3	COG	COG0863	DNA modification methylase	NA
UHGV-1385483_3	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1385483_4	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1385483_4	UniRef90	UniRef90_UPI001C0F5697	NA	NA
UHGV-1385483_4	eggNOG-mapper	1121105.ATXL01000006_gene1363	NA	NA
UHGV-1385483_4	Pfam	PF06356	NA	DUF1064
UHGV-1385483_4	Structural annotation	PF06356	NA	NA
UHGV-1385483_6	PHROG	phrog_9804	NA	unknown function
UHGV-1385483_6	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-1385483_6	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-1385483_6	Structural annotation	PF11417	NA	NA
UHGV-1385483_7	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1385483_7	eggNOG-mapper	931626.Awo_c35220	DnaD domain protein	NA
UHGV-1385483_7	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1385483_7	Structural annotation	PF13463, NF040642, COG1846	NA	NA
UHGV-1385483_8	PHROG	phrog_8684	NA	unknown function
UHGV-1385483_8	UniRef90	UniRef90_UPI001411DA8D	YopX family protein	NA
UHGV-1385483_8	eggNOG-mapper	742767.HMPREF9456_03352	YopX protein	NA
UHGV-1385483_8	Pfam	PF09643	YopX protein	YopX
UHGV-1385483_8	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1385483_8	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1385483_10	Structural annotation	PF07073, COG4568	NA	NA
UHGV-1385483_13	eggNOG-mapper	266117.Rxyl_0586	PFAM Uncharacterised protein family UPF0150	NA
UHGV-1385483_13	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1385483_13	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1385483_13	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-1385483_13	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1385483_14	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1385483_14	PHROG	phrog_17284	NA	unknown function
UHGV-1385483_14	UniRef90	UniRef90_A0A350XVB1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1385483_14	eggNOG-mapper	1291050.JAGE01000001_gene476	C-5 cytosine-specific DNA methylase	NA
UHGV-1385483_14	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1385483_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1385483_14	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-1385483_16	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1385483_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1385483_16	UniRef90	UniRef90_A0A6B9SUY3	HTH cro/C1-type domain-containing protein	NA
UHGV-1385483_16	eggNOG-mapper	1120973.AQXL01000105_gene2576	transcriptional	NA
UHGV-1385483_16	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1385483_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1385483_16	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1385483_16	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1385483_17	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1385483_17	PHROG	phrog_95	integrase	integration and excision
UHGV-1385483_17	UniRef90	UniRef90_A0A1L8D0Y3	Recombinase	NA
UHGV-1385483_17	eggNOG-mapper	1121422.AUMW01000019_gene1766	Resolvase, N terminal domain	NA
UHGV-1385483_17	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1385483_17	Pfam	PF07508	Recombinase	Recombinase
UHGV-1385483_17	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1385483_17	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1385483_17	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1385483_18	KOfam	K11089	TROVE2, SSA2; 60 kDa SS-A/Ro ribonucleoprotein	NA
UHGV-1385483_18	PHROG	phrog_850	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-1385483_18	UniRef90	UniRef90_UPI0001E2DE00	TROVE domain-containing protein	NA
UHGV-1385483_18	eggNOG-mapper	509191.AEDB02000022_gene3058	TROVE domain	NA
UHGV-1385483_18	Pfam	PF05731	TROVE domain	TROVE
UHGV-1385483_18	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA
UHGV-1385483_18	Structural annotation	PF05731, PF05762, MF_01340, NF041674, COG3552	NA	NA
UHGV-1385483_20	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1385483_20	PHROG	phrog_15001	endolysin	lysis
UHGV-1385483_20	UniRef90	UniRef90_A0A644YEA3	SPOR domain-containing protein	NA
UHGV-1385483_20	eggNOG-mapper	1235835.C814_01292	Ami_2	NA
UHGV-1385483_20	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1385483_20	Pfam	PF00395	S-layer homology domain	SLH
UHGV-1385483_20	COG	COG1388	LysM repeat	NA
UHGV-1385483_20	Structural annotation	PF18342, PF01510, NF041850, COG5632	NA	NA
UHGV-1385483_21	PHROG	phrog_3301	pyrophosphatase	other
UHGV-1385483_21	eggNOG-mapper	411459.RUMOBE_01042	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1385483_21	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1385483_21	Structural annotation	COG1694	NA	NA
UHGV-1385483_26	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1385483_26	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1385483_26	Structural annotation	PF06946	NA	NA
UHGV-1385483_27	PHROG	phrog_1220	head protein	head and packaging
UHGV-1385483_27	eggNOG-mapper	588581.Cpap_1262	COG NOG18825 non supervised orthologous group	NA
UHGV-1385483_27	Structural annotation	PF03906, PF20747	NA	NA
UHGV-1385483_28	PHROG	phrog_538	minor tail protein	tail
UHGV-1385483_28	UniRef90	UniRef90_A0A843HVV8	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1385483_28	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-1385483_28	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1385483_28	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1385483_29	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1385483_29	UniRef90	UniRef90_A0A843HU58	Phage tail family protein	NA
UHGV-1385483_29	eggNOG-mapper	706433.HMPREF9430_01256	Phage tail protein	NA
UHGV-1385483_29	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1385483_29	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1385483_30	PHROG	phrog_23464	NA	unknown function
UHGV-1385483_30	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-1385483_30	COG	COG5283	Phage-related tail protein	NA
UHGV-1385483_30	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-1385483_32	PHROG	phrog_1299	holin	lysis
UHGV-1385483_32	UniRef90	UniRef90_A0A2V2F2X8	Enolase	NA
UHGV-1385483_32	eggNOG-mapper	693746.OBV_13280	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1385483_32	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1385483_32	Structural annotation	PF06946	NA	NA
UHGV-1385483_33	PHROG	phrog_1863	NA	unknown function
UHGV-1385483_33	eggNOG-mapper	621372.ACIH01000081_gene2311	NA	NA
UHGV-1385483_34	PHROG	phrog_88	major tail protein	tail
UHGV-1385483_34	UniRef90	UniRef90_UPI000785A720	Ig-like domain-containing protein	NA
UHGV-1385483_34	eggNOG-mapper	66692.ABC1339	phage major tail protein, phi13 family	NA
UHGV-1385483_34	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1385483_34	COG	COG5492	NA	NA
UHGV-1385483_34	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1385483_35	Structural annotation	PF05657	NA	NA
UHGV-1385483_36	UniRef90	UniRef90_A0A6B9STC9	Tail completion protein	NA
UHGV-1385483_36	Structural annotation	TIGR01725	NA	NA
UHGV-1385483_37	UniRef90	UniRef90_A0A6B9SS91	Head-tail connector	NA
UHGV-1385483_37	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-1385483_37	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1385483_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1385483_38	UniRef90	UniRef90_UPI001D07D95D	phage head-tail connector protein	NA
UHGV-1385483_38	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-1385483_38	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1385483_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-1385483_39	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-1385483_39	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-1385483_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1385483_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1385483_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1385483_40	KOfam	K06904	NA	NA
UHGV-1385483_40	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1385483_40	UniRef90	UniRef90_A0A843GD97	HK97 family phage prohead protease	NA
UHGV-1385483_40	eggNOG-mapper	642492.Clole_1857	Phage prohead protease, HK97 family	NA
UHGV-1385483_40	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1385483_40	COG	COG3740	Phage head maturation protease	NA
UHGV-1385483_40	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1385483_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-1385483_41	UniRef90	UniRef90_A0A6B9SS26	Portal protein	NA
UHGV-1385483_41	eggNOG-mapper	642492.Clole_1856	Portal protein	NA
UHGV-1385483_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1385483_41	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1385483_41	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1385483_42	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1385483_42	UniRef90	UniRef90_A0A6B9SRL5	Terminase large subunit	NA
UHGV-1385483_42	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-1385483_42	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1385483_42	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1385483_42	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1385483_42	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1385483_43	PHROG	phrog_1066	NA	unknown function
UHGV-1385483_43	eggNOG-mapper	1211817.CCAT010000007_gene1041	NA	NA