UHGV-1385666

Genome information

Genome length 30,218 bps

CDS count 50

Completeness 72.16% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-1385666
vOTU ID	vOTU-034076
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0212637
BioSample	SAMEA3449205
Country	United Kingdom
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.11
Jumbo phage	No

Genome content
Genome length	30,218 bps
GC content	36.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.86%
Average CDS length	572.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1385666_1	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-1385666_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-1385666_3	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-1385666_3	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-1385666_3	UniRef90	UniRef90_A0A1C6GFL6	Exodeoxyribonuclease 8	NA
UHGV-1385666_3	eggNOG-mapper	395494.Galf_0946	NA	NA
UHGV-1385666_3	Pfam	PF12684	NA	DUF3799
UHGV-1385666_3	Structural annotation	PF12684, MF_03030, TIGR01896, COG2887	NA	NA
UHGV-1385666_4	PHROG	phrog_1499	NA	unknown function
UHGV-1385666_4	UniRef90	UniRef90_D3AA93	AAA_23 domain-containing protein	NA
UHGV-1385666_4	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-1385666_4	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-1385666_4	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-1385666_5	PHROG	phrog_3657	NA	unknown function
UHGV-1385666_5	eggNOG-mapper	1121864.OMO_02139	NA	NA
UHGV-1385666_6	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1385666_6	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1385666_6	UniRef90	UniRef90_A0A255IMH7	Single-stranded DNA-binding protein	NA
UHGV-1385666_6	eggNOG-mapper	411463.EUBVEN_00539	Single-stranded DNA-binding protein	NA
UHGV-1385666_6	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1385666_6	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1385666_6	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1385666_6	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1385666_6	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1385666_7	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-1385666_7	UniRef90	UniRef90_A0A2K3JBB6	ERCC4 domain-containing protein	NA
UHGV-1385666_7	eggNOG-mapper	411460.RUMTOR_02068	NA	NA
UHGV-1385666_7	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-1385666_7	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-1385666_8	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-1385666_8	PHROG	phrog_11992	NA	unknown function
UHGV-1385666_8	UniRef90	UniRef90_UPI001D0EB8AA	CHC2 zinc finger domain-containing protein	NA
UHGV-1385666_8	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-1385666_8	PADLOC	drt-UG29	DRT	DRT
UHGV-1385666_8	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-1385666_8	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-1385666_8	Structural annotation	PF01807	NA	NA
UHGV-1385666_9	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-1385666_9	UniRef90	UniRef90_UPI00143B22DC	NA	NA
UHGV-1385666_9	eggNOG-mapper	357809.Cphy_2984	NA	NA
UHGV-1385666_9	Pfam	PF06048	NA	DUF927
UHGV-1385666_9	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-1385666_9	COG	COG5519	NA	NA
UHGV-1385666_9	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-1385666_13	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-1385666_13	eggNOG-mapper	1235799.C818_02661	NA	NA
UHGV-1385666_13	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-1385666_14	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1385666_14	UniRef90	UniRef90_K1T1G4	Phage protein (Fragment)	NA
UHGV-1385666_14	eggNOG-mapper	552396.HMPREF0863_00287	HNH endonuclease	NA
UHGV-1385666_14	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1385666_14	Structural annotation	PF13392	NA	NA
UHGV-1385666_15	PHROG	phrog_21026	NA	unknown function
UHGV-1385666_19	PHROG	phrog_20593	NA	unknown function
UHGV-1385666_20	PHROG	phrog_954	DNA methyltransferase	other
UHGV-1385666_20	UniRef90	UniRef90_A0A413RZZ9	Class I SAM-dependent methyltransferase	NA
UHGV-1385666_20	eggNOG-mapper	457405.FSDG_01549	methyltransferase	NA
UHGV-1385666_20	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-1385666_20	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-1385666_20	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-1385666_20	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-1385666_22	eggNOG-mapper	1042156.CXIVA_01870	NA	NA
UHGV-1385666_22	Structural annotation	NF008671, COG4710	NA	NA
UHGV-1385666_23	eggNOG-mapper	537013.CLOSTMETH_01096	NA	NA
UHGV-1385666_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1385666_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1385666_24	UniRef90	UniRef90_A0A415MTD9	HNH endonuclease	NA
UHGV-1385666_24	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-1385666_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1385666_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1385666_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1385666_26	UniRef90	UniRef90_UPI00164CCF79	terminase large subunit	NA
UHGV-1385666_26	eggNOG-mapper	1235798.C817_02581	Phage terminase-like protein large subunit	NA
UHGV-1385666_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1385666_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1385666_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1385666_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1385666_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-1385666_27	UniRef90	UniRef90_UPI00148519DF	phage portal protein	NA
UHGV-1385666_27	eggNOG-mapper	1121866.AUGK01000006_gene878	Phage portal protein	NA
UHGV-1385666_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1385666_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1385666_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1385666_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1385666_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1385666_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1385666_28	UniRef90	UniRef90_A0A7C6S6U4	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1385666_28	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-1385666_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1385666_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1385666_28	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-1385666_29	PHROG	phrog_10	major head protein	head and packaging
UHGV-1385666_29	UniRef90	UniRef90_A0A316SAG0	Phage major capsid protein	NA
UHGV-1385666_29	eggNOG-mapper	1384484.AEQU_1180	Phage capsid family	NA
UHGV-1385666_29	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1385666_29	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1385666_29	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1385666_29	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1385666_30	PHROG	phrog_749	NA	unknown function
UHGV-1385666_30	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-1385666_30	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-1385666_31	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-1385666_31	eggNOG-mapper	1121866.AUGK01000006_gene882	NA	NA
UHGV-1385666_31	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1385666_32	eggNOG-mapper	1121866.AUGK01000006_gene883	NA	NA
UHGV-1385666_32	Structural annotation	PF05657, COG3167	NA	NA
UHGV-1385666_33	PHROG	phrog_5509	neck protein	connector
UHGV-1385666_33	UniRef90	UniRef90_W0FMR6	Gp9 protein	NA
UHGV-1385666_33	eggNOG-mapper	1347392.CCEZ01000045_gene11	NA	NA
UHGV-1385666_33	Structural annotation	TIGR01725	NA	NA
UHGV-1385666_34	UniRef90	UniRef90_A0A316S919	Phage tail protein	NA
UHGV-1385666_34	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-1385666_34	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1385666_36	PHROG	phrog_5802	NA	unknown function
UHGV-1385666_37	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1385666_37	UniRef90	UniRef90_UPI00189AF390	phage tail tape measure protein	NA
UHGV-1385666_37	eggNOG-mapper	931626.Awo_c30950	Phage tail tape measure protein, TP901 family	NA
UHGV-1385666_37	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1385666_37	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1385666_37	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1385666_37	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1385666_38	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1385666_38	UniRef90	UniRef90_A0A3C1HYE9	Phage tail protein	NA
UHGV-1385666_38	eggNOG-mapper	1414720.CBYM010000001_gene708	PFAM Phage tail protein	NA
UHGV-1385666_38	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1385666_38	COG	COG4722	Phage-related protein YomH	NA
UHGV-1385666_38	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-1385666_39	PHROG	phrog_3558	tail protein	tail
UHGV-1385666_39	UniRef90	UniRef90_A0A386PHP6	Lysin	NA
UHGV-1385666_39	eggNOG-mapper	641112.ACOK01000073_gene2906	Prophage endopeptidase tail	NA
UHGV-1385666_39	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1385666_39	COG	COG4926	Phage-related protein	NA
UHGV-1385666_39	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1385666_40	PHROG	phrog_5240	tail fiber protein	tail
UHGV-1385666_40	eggNOG-mapper	1354300.AUQY01000002_gene977	Pfam PF00395	NA
UHGV-1385666_40	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-1385666_42	UniRef90	UniRef90_UPI00164C2D72	leucine-rich repeat domain-containing protein	NA
UHGV-1385666_42	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-1385666_42	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-1385666_44	PHROG	phrog_4105	NA	unknown function
UHGV-1385666_44	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-1385666_45	PHROG	phrog_443	holin	lysis
UHGV-1385666_45	UniRef90	UniRef90_A0A1I5VN65	Phage r1t holin	NA
UHGV-1385666_45	eggNOG-mapper	1235797.C816_04172	Putative lactococcus lactis phage r1t holin	NA
UHGV-1385666_45	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1385666_45	Structural annotation	PF16945	NA	NA
UHGV-1385666_46	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1385666_46	PHROG	phrog_1794	amidase	lysis
UHGV-1385666_46	UniRef90	UniRef90_UPI0013E049BA	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1385666_46	eggNOG-mapper	1203606.HMPREF1526_00589	Ami_2	NA
UHGV-1385666_46	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1385666_46	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1385666_46	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1385666_49	UniRef90	UniRef90_A0A373VU48	XRE family transcriptional regulator	NA
UHGV-1385666_49	eggNOG-mapper	140626.JHWB01000009_gene1336	sequence-specific DNA binding	NA
UHGV-1385666_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1385666_49	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA