UHGV-1386693

Genome information

Genome length 31,391 bps

CDS count 68

Completeness 54.48% (medium-quality)

geNomad score 0.9772

Prediction confidence Confident

Genome information
Genome ID	UHGV-1386693
vOTU ID	vOTU-024839
vOTU representative	Yes
Source dataset	MGV
Original genome ID	MGV-GENOME-0219027
BioSample	SAMN00791940
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9772
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.42
Jumbo phage	No

Genome content
Genome length	31,391 bps
GC content	47.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	78.23%
Average CDS length	363.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1386693_1	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-1386693_1	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-1386693_1	UniRef90	UniRef90_UPI0011E755C0	AAA family ATPase	NA
UHGV-1386693_1	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-1386693_1	Pfam	PF13614	AAA domain	AAA_31
UHGV-1386693_1	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-1386693_3	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1386693_3	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-1386693_3	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-1386693_3	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-1386693_3	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-1386693_3	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-1386693_3	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-1386693_6	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-1386693_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1386693_9	UniRef90	UniRef90_A0A1C6D4U5	Helix-turn-helix domain	NA
UHGV-1386693_9	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-1386693_9	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1386693_9	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-1386693_9	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-1386693_10	UniRef90	UniRef90_A0A8J6LUU7	XRE family transcriptional regulator	NA
UHGV-1386693_10	Structural annotation	TIGR03070	NA	NA
UHGV-1386693_11	PHROG	phrog_4652	NA	unknown function
UHGV-1386693_11	UniRef90	UniRef90_A0A0P0DZ87	Cubilin	NA
UHGV-1386693_11	eggNOG-mapper	397290.C810_01459	NA	NA
UHGV-1386693_11	Structural annotation	TIGR02582, COG1604	NA	NA
UHGV-1386693_12	PHROG	phrog_15946	NA	unknown function
UHGV-1386693_12	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-1386693_13	Structural annotation	PF10922	NA	NA
UHGV-1386693_14	Structural annotation	TIGR03826	NA	NA
UHGV-1386693_16	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1386693_16	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-1386693_17	Structural annotation	PF14143	NA	NA
UHGV-1386693_18	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-1386693_18	Structural annotation	PF04606, NF007241	NA	NA
UHGV-1386693_20	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-1386693_20	Structural annotation	PF13451	NA	NA
UHGV-1386693_21	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1386693_21	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-1386693_21	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-1386693_21	Pfam	PF04404	ERF superfamily	ERF
UHGV-1386693_21	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1386693_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1386693_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1386693_22	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-1386693_22	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1386693_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1386693_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1386693_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1386693_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1386693_22	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1386693_23	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1386693_23	UniRef90	UniRef90_A0A8D4LFG4	HNH endonuclease	NA
UHGV-1386693_23	eggNOG-mapper	945021.TEH_18310	NUMOD4 motif	NA
UHGV-1386693_23	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-1386693_23	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-1386693_23	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1386693_23	Structural annotation	PF13392, PF20987	NA	NA
UHGV-1386693_25	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1386693_25	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-1386693_25	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-1386693_25	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-1386693_28	Structural annotation	PF11998, COG5420	NA	NA
UHGV-1386693_31	Structural annotation	PF03465, COG2331	NA	NA
UHGV-1386693_33	Structural annotation	MF_00085, NF003076, COG0231	NA	NA
UHGV-1386693_34	Structural annotation	PF16677	NA	NA
UHGV-1386693_36	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-1386693_36	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-1386693_36	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-1386693_36	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-1386693_37	PHROG	phrog_30878	NA	unknown function
UHGV-1386693_44	Structural annotation	NF041588	NA	NA
UHGV-1386693_45	Pfam	PF04448	NA	DUF551
UHGV-1386693_45	Structural annotation	NF041588	NA	NA
UHGV-1386693_48	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1386693_48	Structural annotation	PF14354, TIGR03655, COG3478	NA	NA
UHGV-1386693_49	PHROG	phrog_15768	NA	unknown function
UHGV-1386693_49	eggNOG-mapper	525373.HMPREF0766_10096	NA	NA
UHGV-1386693_49	Pfam	PF19808	NA	DUF6291
UHGV-1386693_49	Structural annotation	PF19808	NA	NA
UHGV-1386693_50	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-1386693_50	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-1386693_50	UniRef90	UniRef90_UPI001CBC4B63	AAA family ATPase	NA
UHGV-1386693_50	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-1386693_50	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-1386693_50	COG	COG0305	Replicative DNA helicase	NA
UHGV-1386693_50	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-1386693_51	PHROG	phrog_1709	NA	unknown function
UHGV-1386693_51	eggNOG-mapper	1280686.AUKE01000002_gene1328	NA	NA
UHGV-1386693_55	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1386693_55	eggNOG-mapper	1408437.JNJN01000010_gene1241	NA	NA
UHGV-1386693_59	PHROG	phrog_14275	NA	unknown function
UHGV-1386693_59	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-1386693_59	Structural annotation	PF13157, MF_01537, NF007875, COG3123	NA	NA
UHGV-1386693_60	eggNOG-mapper	1280696.ATVY01000001_gene3550	NA	NA
UHGV-1386693_60	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-1386693_61	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1386693_61	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-1386693_61	UniRef90	UniRef90_R6NBT5	Phage anti-repressor protein	NA
UHGV-1386693_61	eggNOG-mapper	903814.ELI_3141	AntA/AntB antirepressor	NA
UHGV-1386693_61	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1386693_61	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1386693_61	Structural annotation	PF08346, TIGR02681, COG3561	NA	NA
UHGV-1386693_62	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-1386693_62	Structural annotation	PF01402, NF041284, COG4710	NA	NA
UHGV-1386693_64	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1386693_64	PHROG	phrog_95	integrase	integration and excision
UHGV-1386693_64	UniRef90	UniRef90_A0A3D4G6V8	Resolvase	NA
UHGV-1386693_64	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-1386693_64	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1386693_64	Pfam	PF07508	Recombinase	Recombinase
UHGV-1386693_64	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1386693_64	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1386693_67	Structural annotation	PF09202, MF_01177, TIGR02702, COG1846	NA	NA
UHGV-1386693_68	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-1386693_68	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-1386693_68	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-1386693_68	COG	COG5410	NA	NA
UHGV-1386693_68	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA